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Improving pplacement#826

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danilodileo wants to merge 28 commits intonf-core:devnf-core/ampliseq:devfrom danilodileo:improving-pplacement-devdanilodileo/ampliseq:improving-pplacement-devCopy head branch name to clipboard

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Commits

Commits on Apr 3, 2024

• Merge pull request nf-core#725 from nf-core/dev

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  d4straub

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Commits on Jun 27, 2024

• Merge pull request nf-core#755 from nf-core/dev

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  d4straub

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Commits on Aug 5, 2024

• Merge pull request nf-core#771 from nf-core/dev

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  d4straub

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Commits on Oct 28, 2024

• added new module for pplacement called hmmexxtract

  

  Erick Delgadillo

  authored and

  Erick Delgadillo

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• include hmmmextract module in main workflow

  

  Erick Delgadillo

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  Erick Delgadillo

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• created a test for pplace_hmmsearch

  

  Danilo Di Leo

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• add schema_phylosearch_input.json

  

  Danilo Di Leo

  committed
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• Merge branch 'improving-pplacement' into improving-pplacement-dev

  

  Danilo Di Leo

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• adding subworfklow fasta_hmmsearch_rank_fastas + implemented nfschema plugin for pplace_hmmsearch_input

  

  Danilo Di Leo

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Commits on Oct 29, 2024

• explicit variable for phylosearch

  

  Danilo Di Leo

  committed
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• parsing correctly input phylosearch

  

  Danilo Di Leo

  committed
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• added subworkflow for phylosearch

  

  Erick Delgadillo

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  Erick Delgadillo

  committed
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• add last piece for running FASTA_NEWICK_EPANG_GAPPA module

  

  Danilo Di Leo

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• add last piece for running FASTA_NEWICK_EPANG_GAPPA module

  

  Danilo Di Leo

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• change merge function with join

  

  Danilo Di Leo

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• update cpu limits for test_pplace_hmmsearch

  

  Danilo Di Leo

  committed
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Commits on Oct 30, 2024

• nf-core fasta_newick_epang_gappa updated

  

  Danilo Di Leo

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Commits on Nov 15, 2024

• Release 2.12.0

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  d4straub

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Commits on Dec 13, 2024

• a lot of updates and nf-test

  

  Danilo Di Leo

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• fix conflict

  

  Danilo Di Leo

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• Merge branch 'nf-core:master' into improving-pplacement-dev

  danilodileo

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• prettier

  

  Danilo Di Leo

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Commits on Jan 20, 2025

• update from dev branch

  

  Danilo Di Leo

  committed
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• fasta newick epang gappa subworkflow updated

  

  Danilo Di Leo

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Commits on Jan 21, 2025

• added nf-test

  

  Danilo Di Leo

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Commits on Jan 23, 2025

• .gitignore update

  

  Danilo Di Leo

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• removed .nf-test

  

  Danilo Di Leo

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• removed whitespace

  

  Danilo Di Leo

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