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v 1.0.3 - 2023-06-05 - Golden Wombat
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@DSchreyer DSchreyer released this 05 Jun 11:36
· 91 commits to master since this release
1.0.3
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v1.0.3 - [2023-06-05] - Golden Wombat

Added

  • Licence, contact, source information for AmpliconArchitect and PrepareAA python scripts - Recommendation by @SPPearce
  • documentation about absolute path needed of AmpliconArchitect data repository - Recommendation by @SPPearce
  • ampliconclassifier stub run tests
  • new version of circdna metromap with updated colors
  • note that ATAC-seq should be used in caution with the pipeline.
  • build docker container for prepareaa -> Needs to be built first and will be included in the next release - Thanks to @ewels
  • nf-core template update 2.8 - Thanks to the nf-core team
  • newest versions of AmpliconArchitect - Recommendation and help from @jluebeck

Fixed

  • Circle_finder bug with bash sort command wanting to write into /tmp/ directory and not into work directory
  • Usage.md updated to new paths and addition of nf-core modules

Dependencies

Deprecated

  • Local python scripts not included in the pipeline
  • Local versions of nf-core modules

Acknowledgements

Thanks to the reviewers @jluebeck and @SPPearce for providing relevant feedback for improvements and clarity of nf-core/circdna. Also thanks to @ewels for the comprehensive help in building the docker image for PrepareAA for future releases.

Contributors

ewels, jluebeck, and SPPearce
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