Merge branch 'master' into master

nf-core · Jan 15, 2025 · 41aca0c · 41aca0c
2 parents 580b17a + b8610b6
commit 41aca0c
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/conf/eddie.config b/conf/eddie.config
@@ -46,7 +46,7 @@ env {
 
 singularity {
     envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
-    runOptions   = '-p -B "$TMPDIR"'
+    runOptions   = '-p --scratch /dev/shm -B "$TMPDIR"'
     enabled      = true
     autoMounts   = true
     cacheDir     = "/exports/igmm/eddie/BioinformaticsResources/nfcore/singularity-images"

diff --git a/conf/pipeline/rnaseq/eddie.config b/conf/pipeline/rnaseq/eddie.config
@@ -1,6 +1,6 @@
 process {
 
-    withName: 'PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT' {
+    withName: 'PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT|TRIMGALORE' {
         clusterOptions = { "-l h_vmem=${(task.memory + 4.GB).bytes / task.cpus}" }
     }
 }