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| Original file line number | Diff line number | Diff line change |
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@@ -9,7 +9,7 @@ params { | |
| } | ||
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| env { | ||
| TMPDIR="$USER" | ||
| TMPDIR="$scratch_dir" | ||
| SINGULARITY_TMPDIR="$scratch_dir" | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| //Profile config names for nf-core/configs | ||
| params { | ||
| config_profile_description = 'Centre for Genomic Regulation (CRG) cluster profile provided by nf-core/configs' | ||
| config_profile_contact = 'Athanasios Baltzis (@athbaltzis)' | ||
| config_profile_url = 'http://www.linux.crg.es/index.php/Main_Page' | ||
| } | ||
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| process { | ||
| executor = 'crg' | ||
| } | ||
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| singularity { | ||
| enabled = true | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,104 @@ | ||
| params { | ||
| config_profile_description = 'HKI clusters profile provided by nf-core/configs.' | ||
| config_profile_contact = 'James Fellows Yates (@jfy133)' | ||
| config_profile_url = 'https://leibniz-hki.de' | ||
| } | ||
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| profiles { | ||
| apate { | ||
| params { | ||
| config_profile_description = 'apate HKI cluster profile provided by nf-core/configs' | ||
| config_profile_contact = 'James Fellows Yates (@jfy133)' | ||
| config_profile_url = 'https://leibniz-hki.de' | ||
| max_memory = 128.GB | ||
| max_cpus = 32 | ||
| max_time = 1440.h | ||
| } | ||
| process { | ||
| executor = 'local' | ||
| maxRetries = 2 | ||
| } | ||
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| executor { | ||
| queueSize = 8 | ||
| } | ||
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| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| cacheDir = '/Net/Groups/ccdata/apps/singularity' | ||
| } | ||
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| conda { | ||
| cacheDir = '/Net/Groups/ccdata/apps/conda_envs' | ||
| } | ||
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| cleanup = true | ||
| } | ||
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| aither { | ||
| params { | ||
| config_profile_description = 'aither HKI cluster profile provided by nf-core/configs' | ||
| config_profile_contact = 'James Fellows Yates (@jfy133)' | ||
| config_profile_url = 'https://leibniz-hki.de' | ||
| max_memory = 128.GB | ||
| max_cpus = 32 | ||
| max_time = 1440.h | ||
| } | ||
| process { | ||
| executor = 'local' | ||
| maxRetries = 2 | ||
| } | ||
|
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| executor { | ||
| queueSize = 8 | ||
| } | ||
|
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| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| cacheDir = '/Net/Groups/ccdata/apps/singularity' | ||
| } | ||
|
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| conda { | ||
| cacheDir = '/Net/Groups/ccdata/apps/conda_envs' | ||
| } | ||
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| cleanup = true | ||
| } | ||
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| arges { | ||
| params { | ||
| config_profile_description = 'arges HKI cluster profile provided by nf-core/configs' | ||
| config_profile_contact = 'James Fellows Yates (@jfy133)' | ||
| config_profile_url = 'https://leibniz-hki.de' | ||
| max_memory = 64.GB | ||
| max_cpus = 12 | ||
| max_time = 1440.h | ||
| } | ||
| process { | ||
| executor = 'local' | ||
| maxRetries = 2 | ||
| } | ||
|
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| executor { | ||
| queueSize = 8 | ||
| } | ||
|
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| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| cacheDir = '/Net/Groups/ccdata/apps/singularity' | ||
| } | ||
|
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| conda { | ||
| cacheDir = '/Net/Groups/ccdata/apps/conda_envs' | ||
| } | ||
|
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| cleanup = true | ||
| } | ||
|
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| debug { | ||
| cleanup = false | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| params { | ||
| config_profile_contact = 'Adrija Kalvisa <[email protected]>' | ||
| config_profile_description = 'dangpufl01 configuration' | ||
| config_profile_url = '' | ||
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| // General cpus/memory/time requirements | ||
| max_cpus = 30 | ||
| max_memory = 200.GB | ||
| max_time = 72.h | ||
| } | ||
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| process { | ||
| executor = 'slurm' | ||
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| } | ||
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| executor { | ||
| queueSize = 5 | ||
| } | ||
|
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| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| runOptions = '--bind /projects:/projects' | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| params { | ||
| config_profile_description = 'University of Hawaii at Manoa' | ||
| config_profile_url = 'http://www.hawaii.edu/its/ci/' | ||
| config_profile_contact = 'Cedric Arisdakessian' | ||
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| max_memory = 400.GB | ||
| max_cpus = 96 | ||
| max_time = 72.h | ||
| } | ||
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| process { | ||
| executor = 'slurm' | ||
| queue = 'shared,exclusive,kill-shared,kill-exclusive' | ||
| module = 'tools/Singularity' | ||
| } | ||
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| singularity { | ||
| enabled = true | ||
| cacheDir = "$HOME/.singularity_images_cache" | ||
| autoMounts = true | ||
| } |
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