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run pipeline tests with singularity and conda too #185

Merged
merged 20 commits into from
Oct 28, 2024
Merged

run pipeline tests with singularity and conda too #185

merged 20 commits into from
Oct 28, 2024

Commits on Jul 25, 2024

  1. run pipeline tests with singularity and conda too

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  2. update changelog

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  3. set up conda and singularity

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  4. run all tests even if one fails

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  5. fix libjpeg.so.9: No such file or directory error in conda container

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  6. fix umi clustering error caused by updating vsearch/cluster module

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  7. update medaca version in conda to solve tensorflow not found error

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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  8. fix medaka process by passing the model as a file

    @mirpedrol
    mirpedrol committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. Try fixes

    @LaurenceKuhl
    LaurenceKuhl committed Jul 26, 2024
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  2. fix typo

    @LaurenceKuhl
    LaurenceKuhl committed Jul 26, 2024
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  3. Merge branch 'dev' into add-more-tests

    @LaurenceKuhl
    LaurenceKuhl authored Jul 26, 2024
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  4. Try different conda version for matrice creation

    @LaurenceKuhl
    LaurenceKuhl committed Jul 26, 2024
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  5. Merge branch 'add-more-tests' of https://github.com/mirpedrol/crisprseq… 

    … into add-more-tests
    @LaurenceKuhl
    LaurenceKuhl committed Jul 26, 2024
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  6. Update mageckflute conda recipe for test_screening_rra

    @LaurenceKuhl
    LaurenceKuhl committed Jul 26, 2024
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Commits on Aug 1, 2024

  1. set NXF_SINGULARITY_HOME_MOUNT to true for singularity

    @mirpedrol
    mirpedrol committed Aug 1, 2024
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  2. try fixing corrupted cache from mageck flute Singularity container

    @mirpedrol
    mirpedrol committed Aug 1, 2024
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Commits on Oct 22, 2024

  1. Merge branch 'dev' into add-more-tests

    @mirpedrol
    mirpedrol authored Oct 22, 2024
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  2. fix bug in ci.yml

    @mirpedrol
    mirpedrol committed Oct 22, 2024
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  3. fix default medaka_model in json schema

    @mirpedrol
    mirpedrol committed Oct 22, 2024
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Commits on Oct 28, 2024

  1. Update templates/template_fluteMLE.R

    @LaurenceKuhl
    LaurenceKuhl authored Oct 28, 2024
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