Try finding a font in the open-fonts package.

nf-core · Feb 3, 2025 · 0fb003e · 0fb003e
1 parent 40c223d
commit 0fb003e
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Showing 3 changed files with 12 additions and 11 deletions.
diff --git a/modules/nf-core/last/dotplot/environment.yml b/modules/nf-core/last/dotplot/environment.yml
@@ -3,5 +3,6 @@ channels:
   - bioconda
 
 dependencies:
-  - conda-forge::pillow=11.1.0
   - bioconda::last=1608
+  - conda-forge::pillow=11.1.0
+  - conda-forge::open-fonts=0.7.0
diff --git a/modules/nf-core/last/dotplot/main.nf b/modules/nf-core/last/dotplot/main.nf
@@ -4,8 +4,8 @@ process LAST_DOTPLOT {
 
     conda "${moduleDir}/environment.yml"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
-        ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/db/db0b5de918238f07ec1ca668be942397da85e26aa582f8927ac37c70896303cf/data'
-        : 'community.wave.seqera.io/library/last:1608--f41c047f7dc37e30'}"
+        ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a3/a35d17772276115874eda45f17b05407c9855ecec8c11d39cce49f0028f44cfb/data'
+        : 'community.wave.seqera.io/library/last_open-fonts:f1048938520a62ad'}"
 
     input:
     tuple val(meta), path(maf), path(annot_b)
@@ -27,9 +27,9 @@ process LAST_DOTPLOT {
     def annot_b_arg = annot_b ? "-b ${annot_b}" : ''
     """
     if [ -d "/home/ubuntu/miniconda3/" ]; then
-        TTF=\$(find /home/ubuntu/miniconda3/ -type f -name 'FreeMono.ttf' | head -n 1)
+        TTF=/home/ubuntu/miniconda3/conda/fonts/open-fonts/DejaVuSansMono-Regular.ttf
     else
-        TTF=/opt/conda/pkgs/pillow-11.1.0-py313h8db990d_0/info/test/Tests/fonts/FreeMono.ttf
+        TTF=/opt/conda/fonts/open-fonts/DejaVuSansMono-Regular.ttf
     fi
     last-dotplot \\
         -f \$TTF \\

diff --git a/modules/nf-core/last/dotplot/tests/main.nf.test.snap b/modules/nf-core/last/dotplot/tests/main.nf.test.snap
@@ -7,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.gif:md5,e040dcdeac84ec44355d1451f26315dc"
+                        "test.gif:md5,cec730f1d060a82553cefe2311708bad"
                     ]
                 ],
                 "1": [
@@ -21,7 +21,7 @@
                         {
                             "id": "test"
                         },
-                        "test.gif:md5,e040dcdeac84ec44355d1451f26315dc"
+                        "test.gif:md5,cec730f1d060a82553cefe2311708bad"
                     ]
                 ],
                 "png": [
@@ -36,7 +36,7 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.4"
         },
-        "timestamp": "2025-01-31T09:55:25.691071"
+        "timestamp": "2025-02-03T09:27:56.241408"
     },
     "sarscov2 - contigs - genome - png - stub": {
         "content": [
@@ -88,7 +88,7 @@
                         {
                             "id": "test"
                         },
-                        "test.png:md5,2768038865ee892bbbe912f8a1a06d16"
+                        "test.png:md5,005267881455bdab7c8bd87ec27060f8"
                     ]
                 ],
                 "2": [
@@ -102,7 +102,7 @@
                         {
                             "id": "test"
                         },
-                        "test.png:md5,2768038865ee892bbbe912f8a1a06d16"
+                        "test.png:md5,005267881455bdab7c8bd87ec27060f8"
                     ]
                 ],
                 "versions": [
@@ -114,6 +114,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.4"
         },
-        "timestamp": "2025-01-31T09:49:41.735968"
+        "timestamp": "2025-02-03T09:27:41.83809"
     }
 }