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remove view
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suzannejin committed Jan 20, 2025
1 parent 5888db2 commit 3003d04
Showing 1 changed file with 0 additions and 26 deletions.
26 changes: 0 additions & 26 deletions subworkflows/nf-core/differential_functional_enrichment/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -113,32 +113,6 @@ workflow DIFFERENTIAL_FUNCTIONAL_ENRICHMENT {
ch_gene_sets.collect()
)

ch_input.view{ it -> "ch_input is ${it}"}
ch_preinput_for_gsea.input.view { it -> "ch_preinput_for_gsea.input is ${it}"}
ch_preinput_for_gsea.contrasts_and_samples.view { it -> "ch_preinput_for_gsea.contrasts_and_samples is ${it}"}
ch_preinput_for_gsea.features.view{ it -> "ch_preinput_for_gsea.features is ${it}"}

GPROFILER2_GOST.out.all_enrich.view { it -> "gprofiler2 output all enrich is ${it}"}
GPROFILER2_GOST.out.sub_enrich.view { it -> "gprofiler2 output sub enrich is ${it}"}
GPROFILER2_GOST.out.plot_html.view { it -> "gprofiler2 output html is ${it}"}

CUSTOM_TABULARTOGSEAGCT.out.gct.view{ it -> "gct output is ${it}"}
CUSTOM_TABULARTOGSEACLS.out.cls.view{ it -> "cls output is ${it}"}
CUSTOM_TABULARTOGSEACHIP.out.chip.view{ it -> "chip output is ${it}"}
GSEA_GSEA.out.report_tsvs_ref.view{ it -> "gsea ref report is ${it}"}
GSEA_GSEA.out.report_tsvs_target.view{ it -> "gsea target report is ${it}"}

PROPR_GREA.out.results.view{ it -> "grea output is ${it}"}

ch_versions
.mix(GPROFILER2_GOST.out.versions)
.mix(CUSTOM_TABULARTOGSEAGCT.out.versions)
.mix(CUSTOM_TABULARTOGSEACLS.out.versions)
.mix(CUSTOM_TABULARTOGSEACHIP.out.versions)
.mix(GSEA_GSEA.out.versions)
.mix(PROPR_GREA.out.versions)
.view{ it -> "versions is ${it}"}

emit:
// here we emit the outputs that will be useful afterwards in the
// nf-core/differentialabundance pipeline
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