Add pre-commit hook to validate environment.ymls (#7086)

* style: Add yaml type * style: Change comments to name of pre-commit hooks * style: Add validation for environment.ymls * style: Validate GitHub action * style: Make the path only modules Co-authored-by: mirpedrol <[email protected]> --------- Co-authored-by: mirpedrol <[email protected]>
nf-core · Jan 27, 2025 · 592ec15 · 592ec15
1 parent 6506b7b
commit 592ec15
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -9,14 +9,22 @@ repos:
     rev: 0.29.4
     hooks:
       - id: check-jsonschema
-        # match meta.ymls in one of the subdirectories of modules/nf-core
+        name: "Match meta.ymls in one of the subdirectories of modules/nf-core"
         files: ^modules/nf-core/.*/meta\.yml$
+        types: [yaml]
         args: ["--schemafile", "modules/yaml-schema.json"]
       - id: check-jsonschema
-        # match meta.ymls in one of the subdirectories of subworkflows/nf-core
+        name: "Validate environment.ymls against schema"
+        files: ^modules/nf-core/.*/environment\.yml$
+        types: [yaml]
+        args: ["--schemafile", "modules/environment-schema.json"]
+      - id: check-jsonschema
+        name: "Match meta.ymls in one of the subdirectories of subworkflows/nf-core"
         files: ^subworkflows/nf-core/.*/meta\.yml$
+        types: [yaml]
         args: ["--schemafile", "subworkflows/yaml-schema.json"]
       - id: check-github-workflows
+      - id: check-github-actions
   # use ruff for python files
   - repo: https://github.com/astral-sh/ruff-pre-commit
     rev: v0.7.3