Code

Add sylph/profile module#7118

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Merged

sofstam merged 64 commits intonf-core:masternf-core/modules:masterfrom sofstam:sylph_profilesofstam/modules:sylph_profileCopy head branch name to clipboardJan 30, 2025

+256-8

Commits

Commits on Nov 28, 2024

• Add sylph/profile module and remove unnecessary pattern from sylph/sketch

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• Remove description

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• Update snap

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• Try again with linting

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• Merge branch 'master' into sylph_profile

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• Update snap

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• Fix linting for meta.yaml

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• Update tests

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Commits on Dec 5, 2024

• Add contains in nf-test

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• Add contains

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• Merge branch 'master' into sylph_profile

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Commits on Jan 8, 2025

• Merge branch 'master' into sylph_profile

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• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/profile/main.nf

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• Update modules/nf-core/sylph/profile/main.nf

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• Update modules/nf-core/sylph/profile/main.nf

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• Update description

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• Remove single_end from the output

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• Merge branch 'master' into sylph_profile

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• Update meta.yml file to include info if fastq/fasta files are provided

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Commits on Jan 16, 2025

• Add tests

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• Merge branch 'master' into sylph_profile

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• Fix test

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• Fix tests

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• Merge branch 'master' into sylph_profile

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Commits on Jan 17, 2025

• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/profile/main.nf

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• Merge branch 'master' into sylph_profile

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Commits on Jan 21, 2025

• Merge branch 'master' into sylph_profile

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• Update to latest paths

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• Merge branch 'master' into sylph_profile

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• Rename variable to database

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Commits on Jan 23, 2025

• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/sketch/meta.yml

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• Merge branch 'master' into sylph_profile

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• Apply review suggestions

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• Merge branch 'sylph_profile' of https://github.com/sofstam/modules into sylph_profile

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• Merge branch 'master' into sylph_profile

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• Update snap

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• Snapshot

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• Test snap

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• Update snapshot to pass the tests

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• Remove test_2.fastq.gz from single_end test

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• Merge branch 'master' into sylph_profile

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Commits on Jan 24, 2025

• Merge branch 'master' into sylph_profile

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• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update snapshot

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• Merge branch 'master' into sylph_profile

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• Merge branch 'master' into sylph_profile

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• Add threads

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• Merge branch 'sylph_profile' of https://github.com/sofstam/modules into sylph_profile

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• Update modules/nf-core/sylph/profile/main.nf

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• Update modules/nf-core/sylph/profile/meta.yml

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• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/profile/main.nf

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• Update modules/nf-core/sylph/profile/tests/main.nf.test

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• Update modules/nf-core/sylph/profile/main.nf

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Commits on Jan 27, 2025

• Merge branch 'master' into sylph_profile

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• add better debugging

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• Update tests

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• Update snapshot

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Commits on Jan 28, 2025

• Merge branch 'master' into sylph_profile

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Commits on Jan 30, 2025

• Merge branch 'master' into sylph_profile

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