Large and complex test data set

[zachary-foster]

A test data set that combines the use of as many features of the pipeline as possible and imitates data from a diagnostic clinic setting. Perhaps including the following:

Representative pathogenic species for each of the following taxa:

• bacteria (2-5 species)
• fungi (2-5 species)
• nematodes (1-2 species)
• insects (1-2 species)

Between 1 and 100 samples for each species using both long and short read sequencing. Most can be 1-5 samples, but it would be nice to have one species with 100ish samples.

Columns with fake data that imitate a diagnostic clinic setting:

• date received
• client
• an ID representing a single "submission" of multiple samples. i.e. it would be the same ID for all samples submitted by a given client at one time
• host taxon (any taxonomic level)
• GPS coordinates

There should be reports for each client as well as a report containing all samples

[zachary-foster]

we have this now