Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONVERSION:ANNDATAR_CONVERT (Sample_X)'

Caused by:
  Process `NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONVERSION:ANNDATAR_CONVERT (Sample_X)` terminated with an error exit status (125)


Command executed [/home/runner/work/scrnaseq/scrnaseq/./workflows/../subworkflows/local/../../modules/local/templates/anndatar_convert.R]:

  #!/usr/bin/env Rscript
  
  # to use nf variables: "Sample_X"
  
  # load libraries
  library(anndataR)
  
  # read input
  adata <- read_h5ad("Sample_X_raw_matrix.h5ad")
  
  # convert to Rds
  obj <- adata$to_Seurat()
  
  # save files
  dir.create(file.path("Sample_X"), showWarnings = FALSE)
  saveRDS(obj, file = "Sample_X/Sample_X_raw_matrix.Rds")

Command exit status:
  125

Command output:
  (empty)

Command error:
  docker: invalid reference format.
  See 'docker run --help'.

Work dir:
  /home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/work/6c/c66496235e50359c4d379cd48167b3

Container:
  docker://fmalmeida/anndatar:dev

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
Nextflow stderr: