Update spaceranger/count module

nf-core · Apr 4, 2024 · d4861bd · d4861bd
1 parent 8ae8c26
commit d4861bd
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Showing 9 changed files with 78 additions and 34 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -55,6 +55,7 @@ process {
     }
 
     withName: SPACERANGER_COUNT {
+        ext.args = '--create-bam false'
         publishDir = [
             path: { "${params.outdir}/${meta.id}/spaceranger" },
             mode: params.publish_dir_mode,

diff --git a/modules.json b/modules.json
@@ -23,7 +23,7 @@
                     },
                     "spaceranger/count": {
                         "branch": "master",
-                        "git_sha": "3bd057bfdfb64578636ff3ae7f7cb8eeab3c0cb6",
+                        "git_sha": "2f0ef0cd414ea43e33625023c72b6af936dce63d",
                         "installed_by": ["modules"]
                     },
                     "untar": {

diff --git a/modules/nf-core/spaceranger/count/main.nf b/modules/nf-core/spaceranger/count/main.nf
diff --git a/modules/nf-core/spaceranger/count/tests/main.nf.test b/modules/nf-core/spaceranger/count/tests/main.nf.test
diff --git a/modules/nf-core/spaceranger/count/tests/main.nf.test.snap b/modules/nf-core/spaceranger/count/tests/main.nf.test.snap
diff --git a/modules/nf-core/spaceranger/count/tests/nextflow.config b/modules/nf-core/spaceranger/count/tests/nextflow.config
diff --git a/tests/pipeline/test_downstream.nf.test.snap b/tests/pipeline/test_downstream.nf.test.snap
diff --git a/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap
diff --git a/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap