Update nf_research_tools.rdb.model.csv

nf_research_tools.rdb.model.csv

@@ -1,6 +1,6 @@
 Attribute,Description,Valid Values,DependsOn,Required,Source,Parent,Properties,DependsOn Component,Validation Rules
 Component,Type of submitted information.,,,TRUE,,,,,
-resource,"A tool used in the research process (i.e. animal model, cell line, etc.)",,"Component, resourceId, geneticReagentId, antibodyId, cellLineId, animalModelId, rrid, resourceName, synonyms, resourceType, description, usageRequirements, howToAcquire, dateAdded, dateModified",FALSE,,,"resourceId, geneticReagentId, antibodyId, cellLineId, animalModelId, rrid, resourceName, synonyms, resourceType, description, usageRequirements, howToAcquire, dateAdded, dateModified","geneticReagent, antibody, cellLine, animalModel",
+resource,"A tool used in the research process (i.e. animal model, cell line, etc.)",,"Component, resourceId, geneticReagentId, antibodyId, cellLineId, animalModelId, biobankId, rrid, resourceName, synonyms, resourceType, description, usageRequirements, howToAcquire, dateAdded, dateModified",FALSE,,,"resourceId, geneticReagentId, antibodyId, cellLineId, animalModelId, biobankId, rrid, resourceName, synonyms, resourceType, description, usageRequirements, howToAcquire, dateAdded, dateModified","geneticReagent, antibody, cellLine, animalModel",
 resourceId,A unique identifier for the resource.,,,TRUE,,resource,,,
 rrid,"The RRID, a standard resource identifier that will facilitate interoperability with other databases, and is an increasingly-used identifier for publications https://scicrunch.org/resources if available",,,FALSE,,resource,,,
 resourceName,The “canonical” name of the resource,,,TRUE,,resource,,,
@@ -11,12 +11,12 @@ Cell Line,,,cellLineId,,,resourceType,,,
 Genetic Reagent,,,geneticReagentId,,,resourceType,,,
 Biobank,,,biobankId,,,resourceType,,,
 description,Free text description/summary/overview/purpose of the resource.,,,FALSE,,resource,,,
-usageRequirements,Any known restrictions on use of the resource. ,"data sharing required, non-commercial use only, re-distribution not permitted, generation of germ line transmitting chimeras not permitted, creation of functional gametes not permitted, generation of interspecies chimeras not permitted, human cloning not permitted, cannot be used for treatment purposes, IRB documentation required, special licencing restrictions (see vendor for more information), unknown",,FALSE,,resource,,,list like
+usageRequirements,Any known restrictions on use of the resource. ,"data sharin g required, non-commercial use only, re-distribution not permitted, generation of germ line transmitting chimeras not permitted, creation of functional gametes not permitted, generation of interspecies chimeras not permitted, human cloning not permitted, cannot be used for treatment purposes, IRB documentation required, special licencing restrictions (see vendor for more information), unknown",,FALSE,,resource,,,list like
 howToAcquire,How to acquire a particular resource. ,,,TRUE,,resource,,,
 dateAdded,The date that the resource was originally added.,,,TRUE,,resource,,,
 dateModified,The last update of the resource metadata (not including observations).,,,TRUE,,resource,,,
 geneticReagentDetails,Genetic reagents.,,"Component, geneticReagentId, insertName, insertEntrezId, gRNAshRNASequence, insertSize, insertSpecies, nTerminalTag, cTerminalTag, cloningMethod, 5primeCloningSite, 5primeSiteDestroyed, 3primeCloningSite, 3primeSiteDestroyed, promoter, 5primer, 3primer, vectorBackbone, vectorType, backboneSize, totalSize, bacterialResistance, selectableMarker, copyNumber, growthTemp, growthStrain, hazardous",FALSE,,geneticReagentDetails,"geneticReagentId, insertName, insertEntrezId, gRNAshRNASequence, insertSize, insertSpecies, nTerminalTag, cTerminalTag, cloningMethod, 5primeCloningSite, 5primeSiteDestroyed, 3primeCloningSite, 3primeSiteDestroyed, promoter, 5primer, 3primer, vectorBackbone, vectorType, backboneSize, totalSize, bacterialResistance, selectableMarker, copyNumber, growthTemp, growthStrain, hazardous",,
-geneticReagentId,A unique identifier for the reagent.,,,FALSE,,geneticReagentDetails,,,
+geneticReagentId,A unique identifier for the reagent.,,,TRUE,,geneticReagentDetails,,,
 insertName,Name of the main gene insert in the plasmid.,,,TRUE,,geneticReagentDetails,,,
 insertEntrezId,The entrez gene id for the gene insert,,,TRUE,,geneticReagentDetails,,,
 gRNAshRNASequence,"The sequence of the gRNA or shRNA for the gene insert, if present. ",,,FALSE,,geneticReagentDetails,,,
@@ -78,7 +78,7 @@ source,"The source of resource application information (e.g. Vendor, Community)"
 applications,"One or more uses for the resource (e.g. western blot, immunofluorescence)","Western Blot, Immunofluorescence, ELISA, Immunohistochemistry, Immunoprecipitation, Tumor Growth Studies, Immunohistochemistry (Paraffin-Embedded), Immunocytochemistry, Immunohistochemistry (Frozen Sections), Flow Cytometry, Affinity Purification, Microarray",,TRUE,,resourceApplication,,,list like
 links,shareable links related to the resource,,,FALSE,,resourceApplication,,,list
 antibodyDetails,"A blood protein produced in response to and counteracting a specific antigen. Antibodies combine chemically with substances which the body recognizes as alien, such as bacteria, viruses, and foreign substances in the blood.",,"Component, antibodyId, uniprotId, targetAntigen, clonality, cloneId, reactiveSpecies, conjugate, hostOrganism",FALSE,,antibodyDetails,,,
-antibodyId,A unique identifier for the antibody.,,,FALSE,,antibodyDetails,"antibodyId, uniprotId, targetAntigen, clonality, cloneId, reactiveSpecies, conjugate, hostOrganism",,
+antibodyId,A unique identifier for the antibody.,,,TRUE,,antibodyDetails,"antibodyId, uniprotId, targetAntigen, clonality, cloneId, reactiveSpecies, conjugate, hostOrganism",,
 uniprotId,The uniprotId of the antibody.,,,TRUE,,antibodyDetails,,,
 targetAntigen,Antigen that is targeted by antibody. (e.g. Neurofibromin 1 human),,,TRUE,,antibodyDetails,,,
 clonality,They type of clonality of the antibody,"Unknown, Cocktail, Control, Isotype Control, Monoclonal, Monoclonal Secondary, Polyclonal, Polyclonal Secondary, OligoClonal, Recombinant, Recombinant Monoclonal, Recombinant Monoclonal Secondary, Recombinant Polyclonal, Recombinant Polyclonal Secondary",,TRUE,,antibodyDetails,,,
@@ -94,7 +94,7 @@ sex,The sex of the individual from which the resource was derived from.,"Male, F
 age,That age of the individual from which the resource was derived from.,,,FALSE,,donor,,,
 race,The ethnicity of the individual the resource was derived from.,,,FALSE,,donor,,,
 cellLineDetails,A cell culture selected for uniformity from a cell population derived from a usually homogeneous tissue source (such as an organ).,,"Component, cellLineId, donorId, organ, tissue, cellLineCategory, originYear, strProfile, populationDoublingTime, resistance, contaminatedMisidentified, cellLineGeneticDisorder, cellLineManifestation",FALSE,,cellLineDetails,"cellLineId, donorId, organ, tissue, cellLineCategory, originYear, strProfile, populationDoublingTime, resistance, contaminatedMisidentified, cellLineGeneticDisorder, cellLineManifestation",donor,
-cellLineId,A unique identifier for the cell line.,,,FALSE,,cellLineDetails,,,
+cellLineId,A unique identifier for the cell line.,,,TRUE,,cellLineDetails,,,
 organ,The organ the cell line is derived from.,"Biliary Tract, Bladder, Bone Marrow, Brain, Breast, Bronchial Tree, Duct, Epididymis, Esophagus, Fallopian Tube, Gallbladder, Gland, Gonad, Heart, Intestine, Kidney, Liver, Lung, Lymph Node, Ear, Eye, Nose, Tongue, Pancreas, Penis, Seminal Vesicle, Skin, Spermatic Cord, Spinal Cord, Spleen, Stomach, Thymus Gland, Tonsil, Trachea, Tracheobronchial Tree, Ureter, Urethra, Uterus, Vagina, Vulva",,FALSE,,cellLineDetails,,,
 tissue,The tissue the cell line is derived from.,"Blood, Bone marrow, Buccal mucosa, Buffy coat, Cerebral cortex, Dorsal root ganglion, Embryonic tissue, Meninges, Nerve tissue, Optic nerve, Plasma, Primary tumor, Sciatic nerve, Serum, Splenocyte, Unspecified, Whole brain",,FALSE,,cellLineDetails,,,
 cellLineCategory,The category to which the cell line belongs.,"Cancer cell line, Conditionally immortalized cell line, Embryonic stem cell, Factor-dependent cell line, Finite cell line, Hybridoma, Induced pluripotent stem cell, Somatic stem cell, Spontaneously immortalized cell line, Stromal cell line, Telomerase immortalized cell line, Transformed cell line, Undefined cell line type",,FALSE,,cellLineDetails,,,
@@ -121,7 +121,7 @@ chromosome,Chromosome number of affected gene. (e.g. 11),,,FALSE,,mutationDetail
 mutation,(intermediary table),,"Component, mutationId, mutationDetailsId, animalModelId, cellLineId",FALSE,,mutation,"mutationId, mutationDetailsId, animalModelId, cellLineId","mutationDetails, animalModelDetails, cellLineDetails",
 mutationId,A unique identifier for the mutation burden of the resource.,,,FALSE,,mutation,,,
 animalModelDetails,"An animal sufficiently like humans in its anatomy, physiology, or response to a pathogen to be used in medical research in order to obtain results that can be extrapolated to human medicine.",,"Component, animalModelId, donorId, transplantationDonorId, animalState, backgroundStrain, backgroundSubstrain, strainNomenclature, generation, transplantationType, animalModelGeneticDisorder, animalModelOfManifestation",FALSE,,animalModelDetails,"animalModelId, donorId, animalState, backgroundStrain, backgroundSubstrain, strainNomenclature, generation, transplantationType, transplantationDonorId, animalModelGeneticDisorder, animalModelOfManifestation",donor,
-animalModelId,A unique identifier for the animal model.,,,FALSE,,animalModelDetails,,,
+animalModelId,A unique identifier for the animal model.,,,TRUE,,animalModelDetails,,,
 animalState,"State the animal is in according to the vendor/developer. (e.g. embryo, sperm, live)",,,FALSE,,animalModelDetails,,,
 backgroundStrain,"An assigned name that describes the genetic make-up (all its alleles at all loci) except the mutated gene of interest and a very small amount of other genetic material, generally from one or two other strains. Correct strain nomenclature indicates what a mutant strain’s background is.",,,FALSE,,animalModelDetails,,,
 backgroundSubstrain,"The substrain is a particular variety of a strain. For example, a C57BL/6 mice may have a substrain of C57BL/6J, C57BL/6Tac, or another substrain. ",,,FALSE,Sage Bionetworks,animalModelDetails,,,