Code and data used in the paper "Widespread natural variation of DNA methylation within angiosperms" (Niederhuth et al. 2016, Genome Biology) https://github.com/niederhuth/Widespread-natural-variation-of-DNA-methylation-within-angiosperms
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Final_draft.pdf: The final draft of the manuscript.
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Figures-and-tables: Final figures and tables.
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conserved-non-coding-sequences: Contains conserved non-coding sequences used in paper. These were determined in pair-wise comparison using findCNS (Turco et al. 2013 Front. Plant Sci.).
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species_tree_50_seq.tre: Species tree used for phylogenetic least squares.
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mC_pyTools.py: python functions used for analyses.