nih-cfde · ctb · Jun 29, 2022 · Jun 30, 2022 · Jul 1, 2022 · Jul 5, 2022
diff --git a/Makefile b/Makefile
@@ -1,8 +1,8 @@
 all:
-	snakemake -j 1
+	snakemake -j 1 --use-conda
 
 upload:
-	snakemake -j 1 upload
+	snakemake -j 1 --use-conda upload
 
 update: upload
 

diff --git a/Snakefile b/Snakefile
@@ -130,7 +130,9 @@ rule gene_json_alias_widget:
     output:
         directory("output_pieces_gene/00-alias")
     params:
-        widget_name = "00-alias",
+        widget_name = "00-alias"
+    conda:
+        "envs/perl.yml"
     shell: """
         {input.script} gene {input.id_list} {input.alias_info} \
             --widget-name alias_table \

diff --git a/envs/perl.yml b/envs/perl.yml
@@ -0,0 +1,8 @@
+channels:
+    - conda-forge
+    - bioconda
+    - defaults
+dependencies:
+    - perl>=5.32,<6
+    - curl>=7,<8
+    - perl-uri