rel(23.0.0): update CHANGES [skip ci]

nipreps · Mar 10, 2023 · 9ebb61e · 9ebb61e
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@@ -1,10 +1,26 @@
-23.0.0 (TBD)
-============
-A new series, mostly involving maintenance housekeeping, and including some relevant bugfixes.
-Probably, the most relevant is **the optimization of the indexing** of the input BIDS folder,
+23.0.0 (March 10, 2023)
+=======================
+The new 23.0.x series include several prominent changes.
+Visualization has been migrated from *MRIQC* and *niworkflows* over to the new *NiReports* project.
+This series include a major bugfix with **the optimization of the indexing** of the input BIDS folder,
 which was taking large times with sizeable datasets.
-Another relevant addition is inclusion of telemetry with *migas*.
+Telemetry has also been incorporated with *migas*.
+These new series also involve maintenance housekeeping, and includes some relevant bugfixes.
 
+New contributors
+----------------
+
+* `@arokem <https://github.com/arokem>`__ made their first contribution in `#1040 <https://github.com/nipreps/mriqc/pull/1040>`__
+* `@yarikoptic <https://github.com/yarikoptic>`__ made their first contribution in `#1057 <https://github.com/nipreps/mriqc/pull/1057>`__
+* `@esavary <https://github.com/esavary>`__ made their first contribution in `#1047 <https://github.com/nipreps/mriqc/pull/1047>`__
+
+CHANGES
+-------
+**Full Changelog**: https://github.com/nipreps/mriqc/compare/22.0.6...23.0.0
+
+* FIX: Send metadata extraction to workers (functional workflow) (#1081)
+* FIX: Plot coronal as main plain for mosaic of rodent images (#1027)
+* FIX: Address non-empty take from empty axes (anatomical IQMs) (#1077)
 * FIX: Uniformize building workflow message (anat vs. func) (#1072)
 * FIX: Move telemetry atexit into entrypoint func (#1067)
 * FIX: Preempt PyBIDS to spend time indexing non-BIDS folders (#1050)
@@ -13,18 +29,62 @@ Another relevant addition is inclusion of telemetry with *migas*.
 * ENH: Add DataLad getter to inputs of functional workflows (#1071)
 * ENH: Add migas telemetry (#1036)
 * ENH: Add codespell automation: config, action, and typos fixed (#1057)
-* MAINT: Conclude porting of reportlets into NiReports (#1068)
+* MAINT: Update *NiReports* calls to upcoming interfaces API (#1078)
+* MAINT: Pacify codespell (#1080)
+* MAINT: Conclude porting of reportlets into *NiReports* (#1068)
 * MAINT: Migrate to hatchling (#1070)
 * MAINT: Pin PyBIDS 0.15.6 (culminating #1050) (#1069)
 * MAINT: Update niworkflows pin to support newer ANTs releases (#1047)
 * MAINT: Fix minor aspects of WebAPI deployment on CircleCI (#1064)
-* MAINT: Add McKenzie to the maintainers table (#1059)
 * MAINT: Update CircleCI executor and use built-in docker-compose (#1061)
 * MAINT: Rotate CircleCI secrets and setup up org-level context (#1046)
 * DOC: Update documentation with the new carpet plot (#1045)
 * DOC: Complete the documentation of ``summary_stats()`` (#1044)
 * DOC: Fixes a couple of broken links to the *nipype* documentation (#1040)
 
+.. admonition:: Author list for papers based on *MRIQC* 23.0 series
+
+    As described in the `Contributor Guidelines
+    <https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
+    anyone listed as developer or contributor may write and submit manuscripts
+    about *MRIQC*.
+    To do so, please move the author(s) name(s) to the front of the following list:
+
+    Zvi Baratz \ :sup:`1`\ ; Christopher J. Markiewicz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Dylan Nielson \ :sup:`4`\ ; Jan Varada \ :sup:`5`\ ; Ross W. Blair \ :sup:`2`\ ; Céline Provins \ :sup:`6`\ ; William Triplett \ :sup:`7`\ ; Mathias Goncalves \ :sup:`2`\ ; Nikita Beliy \ :sup:`8`\ ; John A. Lee \ :sup:`9`\ ; Ursula A. Tooley \ :sup:`10`\ ; James D. Kent \ :sup:`11`\ ; Yaroslav O. Halchenko \ :sup:`12`\ ; Bennet Fauber \ :sup:`13`\ ; Taylor Salo \ :sup:`14`\ ; Michael Krause \ :sup:`15`\ ; Pablo Velasco \ :sup:`16`\ ; Thomas Nichols \ :sup:`17`\ ; Adam Huffman \ :sup:`18`\ ; Johannes Achtzehn \ :sup:`19`\ ; Joke Durnez \ :sup:`2`\ ; Satrajit S. Ghosh \ :sup:`20`\ ; Asier Erramuzpe \ :sup:`21`\ ; Benjamin Kay \ :sup:`22`\ ; Daniel Birman \ :sup:`2`\ ; Elodie Savary \ :sup:`23`\ ; McKenzie P. Hagen \ :sup:`24`\ ; Michael G. Clark \ :sup:`25`\ ; Patrick Sadil \ :sup:`26`\ ; Rafael Garcia-Dias \ :sup:`27`\ ; Adam G. Thomas \ :sup:`28`\ ; Russell A. Poldrack \ :sup:`2`\ ; Ariel Rokem \ :sup:`29`\ ; Oscar Esteban \ :sup:`30`\ .
+
+    Affiliations:
+
+      1. Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
+      2. Department of Psychology, Stanford University, CA, USA
+      3. Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
+      4. Section on Clinical and Computational Psychiatry, National Institute of Mental Health, Bethesda, MD, USA
+      5. Functional MRI Facility, National Institute of Mental Health, Bethesda, MD, USA
+      6. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
+      7. University of Florida: Gainesville, Florida, US
+      8. CRC ULiege, Liege, Belgium
+      9. Quansight, Dublin, Ireland
+      10. Department of Neuroscience, University of Pennsylvania, PA, USA
+      11. Department of Psychology, University of Texas at Austin, TX, USA
+      12. Psychological and Brain Sciences Department, Dartmouth College, NH, USA
+      13. University of Michigan, Ann Arbor, USA
+      14. Department of Psychology, Florida International University, FL, USA
+      15. Max Planck Institute for Human Development, Berlin, Germany
+      16. Center for Brain Imaging, New York University, NY, USA
+      17. Oxford Big Data Institute, University of Oxford, Oxford, GB
+      18. Department of Physics, Imperial College London, London, UK
+      19. Charité Berlin, Berlin, Germany
+      20. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA
+      21. Computational Neuroimaging Lab, BioCruces Health Research Institute
+      22. Washington University School of Medicine, St.Louis, MO, USA
+      23. Department of Radiology, Lausanne University Hospital and University of Lausanne, Switzerland
+      24. Psychology Department, University of Washington, Seattle, WA, USA
+      25. National Institutes of Health, USA
+      26. Johns Hopkins Bloomberg School of Public Health, MD, USA
+      27. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
+      28. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA
+      29. The University of Washington eScience Institute, WA, USA
+      30. Department of Radiology, Lausanne University Hospital and University of Lausanne
+
 22.0.6 (August 24, 2022)
 ========================
 A hotfix release partially rolling-back the previous fix #1025.