Feat: Implement a visualisation feature to NiTransforms#212

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jmarabotto wants to merge 58 commits intonipy:masterfrom jmarabotto:feat/vis

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Commits on Jul 11, 2024

feat: Implement vis

Julien Marabotto
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enh: Update plotting

Julien Marabotto
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enh: Reworked figure formatting and code structure

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enh: code structure. Plotting now a class object.

Julien Marabotto
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fix: remove straneous spaces

Julien Marabotto
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fix: remove straneous spaces

Julien Marabotto
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enh: code structure

Julien Marabotto
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N/A

Julien Marabotto
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enh: update progress on vis

Julien Marabotto
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enh: Implemented function descriptions, reworked some lines.

Julien Marabotto
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feat: First implementation of draft dsm plots.

Julien Marabotto
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feat: First draft of vis.py

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Feat: Addition of new, improved file vis_v2.py with new developments to plotting feature

Julien Marabotto
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enh: 1. Implemented 3d quiver; 2. Updated formatting; 3. Updated function descriptions

Julien Marabotto
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fix: Reworked file naming and versions

Julien Marabotto
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fix: Relocate draft files

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Feat: New file version, implemented divergence of deltas field. New (draft) interactive slider feature to switch between slices.

Julien Marabotto
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Fix: ajust location of draft files

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enh: finalised div map, removed normalised dsm plot. Prepared V5

Julien Marabotto
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Fix: fixed jacobian calculations, implemented jacobian-mapped scatter plot. Implemented function descriptors.

Julien Marabotto
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Feat: Created v6 and reorganised drafts

Julien Marabotto
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Feat: Created v6 and reorganised drafts

Julien Marabotto
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fix: debug grid, partial fix

Julien Marabotto
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Feat: Finalised grid, code functional. Required: clean up files; clean up straneous comments and code; implement NotImplemented errors for sliders

Julien Marabotto
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Enh: formatting

Julien Marabotto
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Enh: Removed draft files, rename final vis.py

Julien Marabotto
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fix: corrected descriptions

Julien Marabotto
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enh: code structure

Julien Marabotto
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remove example

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Enh: New file test_vis.py for implementation of tests. Added checks for slice values in vis.py, removed straneous imports and updated various comments.

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removed draft python files

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enh: Further additions to test_vis, output path for figures added to conftest

Julien Marabotto
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Fix: test 3d quiver fixed, fixed identical savefig filenames

Julien Marabotto
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fix: accidentally running examples

Julien Marabotto
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Commits on Jul 15, 2024

Fix: pacify flake8

Julien Marabotto
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Fix: pacify flake8

Julien Marabotto
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Julien Marabotto
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Fix: pacify flake8

Julien Marabotto
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Fix: pacify flake8

Julien Marabotto
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Enh: increase CodeCov coverage

Julien Marabotto
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Enh: increase CodeCov coverage, pacify flake8

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Fix Pacify flake8

Julien Marabotto
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Commits on Jul 16, 2024

Fix: RGB quiver plot failing if plotting transforms independent of one or more spatial dimensions (see someones_displacement_field.nii.gz). Fixed.

Julien Marabotto
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Fix: pacify flake8

Julien Marabotto
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Fix: pacify flake8

Julien Marabotto
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Fix: pacify flake8

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Feat: creation of notebook for vis module

Julien Marabotto
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Commits on Jul 19, 2024

feat: plot linear, planar and spherical coefficient. Other code tidying.

Julien Marabotto
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pacify flake8

Julien Marabotto
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fix: mistakenly broke syntax

Julien Marabotto
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enh: added tests for codecov

Julien Marabotto
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Commits on Jul 23, 2024

Update nitransforms/tests/test_vis.py

jmarabotto
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Update nitransforms/tests/test_vis.py

jmarabotto
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Update nitransforms/vis.py

jmarabotto
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Update nitransforms/vis.py

jmarabotto
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effigies
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Update nitransforms/vis.py

jmarabotto
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fix: pacify flake8, updated notebook

Julien Marabotto
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fix? read the docs

Julien Marabotto
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Julien Marabotto
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Commits on Sep 16, 2024

Link to notebook
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