Built for release WS285. Ontology not changed since WS284.

obophenotype · Mar 22, 2022 · 16e5ecc · 16e5ecc
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diff --git a/imports/ro_import.owl b/imports/ro_import.owl
@@ -16,7 +16,7 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbbt/imports/ro_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2021-12-14/imports/ro_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2022-03-22/imports/ro_import.owl"/>
     </owl:Ontology>
 
 
@@ -242,6 +242,12 @@
 
 
 
+    <!-- http://purl.org/dc/terms/contributor -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
+
+
+
     <!-- http://purl.org/dc/terms/creator -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
@@ -2246,17 +2252,17 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
-    <!-- http://purl.obolibrary.org/obo/ro.owl/RO_0017001 -->
+    <!-- http://purl.obolibrary.org/obo/RO_0017001 -->
 
-    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ro.owl/RO_0017001">
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0017001">
         <owl:propertyChainAxiom rdf:parseType="Collection">
             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
         </owl:propertyChainAxiom>
         <obo:IAO_0000112>A diagnostic testing device utilizes a specimen.</obo:IAO_0000112>
         <obo:IAO_0000115>X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.</obo:IAO_0000115>
         <obo:IAO_0000117>Asiyah Lin</obo:IAO_0000117>
-        <obo:IAO_0000117>Bill Duncan (https://orcid.org/0000-0001-9625-1899)</obo:IAO_0000117>
+        <obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 Bill Duncan</obo:IAO_0000117>
         <obo:IAO_0000232>A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.</obo:IAO_0000232>
         <obo:IAO_0000232>See github ticket https://github.com/oborel/obo-relations/issues/497</obo:IAO_0000232>
         <oboInOwl:creation_date>2021-11-08</oboInOwl:creation_date>
@@ -2265,6 +2271,57 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/RO_0019000 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019000">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+        <rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019000"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/RO_0019001 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019001">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0019000"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019001"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>positively regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/RO_0019002 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019002">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0019000"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019001"/>
+        </owl:propertyChainAxiom>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019002"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>negatively regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //
@@ -2522,6 +2579,16 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/PATO_0000001 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000001">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
+        <obo:IAO_0000589>quality (PATO)</obo:IAO_0000589>
+        <rdfs:label>quality</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //
@@ -2640,13 +2707,13 @@ For example, A and B may be gene products and binding of B by A positively regul
     <rdf:Description rdf:about="urn:swrl#mf2">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#y">
+    <rdf:Description rdf:about="urn:swrl:var#x">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#z">
+    <rdf:Description rdf:about="urn:swrl:var#y">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#x">
+    <rdf:Description rdf:about="urn:swrl:var#z">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
     <rdf:Description>
@@ -3734,6 +3801,50 @@ e.g.  if GP X enables ATPase coupled transporter activity&apos; and &apos;ATPase
             </rdf:Description>
         </swrl:head>
     </rdf:Description>
+    <rdf:Description>
+        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
+        <swrl:body>
+            <rdf:Description>
+                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                <rdf:first>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                        <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
+                        <swrl:argument1 rdf:resource="urn:swrl:var#x"/>
+                        <swrl:argument2 rdf:resource="urn:swrl:var#y"/>
+                    </rdf:Description>
+                </rdf:first>
+                <rdf:rest>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                        <rdf:first>
+                            <rdf:Description>
+                                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                                <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0019002"/>
+                                <swrl:argument1 rdf:resource="urn:swrl:var#y"/>
+                                <swrl:argument2 rdf:resource="urn:swrl:var#z"/>
+                            </rdf:Description>
+                        </rdf:first>
+                        <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
+                    </rdf:Description>
+                </rdf:rest>
+            </rdf:Description>
+        </swrl:body>
+        <swrl:head>
+            <rdf:Description>
+                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                <rdf:first>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                        <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0019001"/>
+                        <swrl:argument1 rdf:resource="urn:swrl:var#x"/>
+                        <swrl:argument2 rdf:resource="urn:swrl:var#z"/>
+                    </rdf:Description>
+                </rdf:first>
+                <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
+            </rdf:Description>
+        </swrl:head>
+    </rdf:Description>
     <rdf:Description>
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
         <swrl:body>

diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
@@ -16,7 +16,7 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbbt/imports/ro_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2021-12-14/imports/ro_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2022-03-22/imports/ro_import.owl"/>
     </owl:Ontology>
 
 
@@ -242,6 +242,12 @@
 
 
 
+    <!-- http://purl.org/dc/terms/contributor -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
+
+
+
     <!-- http://purl.org/dc/terms/creator -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
@@ -2246,17 +2252,17 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
-    <!-- http://purl.obolibrary.org/obo/ro.owl/RO_0017001 -->
+    <!-- http://purl.obolibrary.org/obo/RO_0017001 -->
 
-    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ro.owl/RO_0017001">
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0017001">
         <owl:propertyChainAxiom rdf:parseType="Collection">
             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
         </owl:propertyChainAxiom>
         <obo:IAO_0000112>A diagnostic testing device utilizes a specimen.</obo:IAO_0000112>
         <obo:IAO_0000115>X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.</obo:IAO_0000115>
         <obo:IAO_0000117>Asiyah Lin</obo:IAO_0000117>
-        <obo:IAO_0000117>Bill Duncan (https://orcid.org/0000-0001-9625-1899)</obo:IAO_0000117>
+        <obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 Bill Duncan</obo:IAO_0000117>
         <obo:IAO_0000232>A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.</obo:IAO_0000232>
         <obo:IAO_0000232>See github ticket https://github.com/oborel/obo-relations/issues/497</obo:IAO_0000232>
         <oboInOwl:creation_date>2021-11-08</oboInOwl:creation_date>
@@ -2265,6 +2271,57 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/RO_0019000 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019000">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+        <rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019000"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/RO_0019001 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019001">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0019000"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019001"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>positively regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/RO_0019002 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0019002">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0019000"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019001"/>
+        </owl:propertyChainAxiom>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0019002"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.</obo:IAO_0000115>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-8688-6599"/>
+        <rdfs:label>negatively regulates characteristic</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //
@@ -2522,6 +2579,16 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/PATO_0000001 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000001">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
+        <obo:IAO_0000589>quality (PATO)</obo:IAO_0000589>
+        <rdfs:label>quality</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //
@@ -2640,13 +2707,13 @@ For example, A and B may be gene products and binding of B by A positively regul
     <rdf:Description rdf:about="urn:swrl#mf2">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#y">
+    <rdf:Description rdf:about="urn:swrl:var#x">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#z">
+    <rdf:Description rdf:about="urn:swrl:var#y">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
-    <rdf:Description rdf:about="urn:swrl:var#x">
+    <rdf:Description rdf:about="urn:swrl:var#z">
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
     </rdf:Description>
     <rdf:Description>
@@ -3734,6 +3801,50 @@ e.g.  if GP X enables ATPase coupled transporter activity&apos; and &apos;ATPase
             </rdf:Description>
         </swrl:head>
     </rdf:Description>
+    <rdf:Description>
+        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
+        <swrl:body>
+            <rdf:Description>
+                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                <rdf:first>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                        <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
+                        <swrl:argument1 rdf:resource="urn:swrl:var#x"/>
+                        <swrl:argument2 rdf:resource="urn:swrl:var#y"/>
+                    </rdf:Description>
+                </rdf:first>
+                <rdf:rest>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                        <rdf:first>
+                            <rdf:Description>
+                                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                                <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0019002"/>
+                                <swrl:argument1 rdf:resource="urn:swrl:var#y"/>
+                                <swrl:argument2 rdf:resource="urn:swrl:var#z"/>
+                            </rdf:Description>
+                        </rdf:first>
+                        <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
+                    </rdf:Description>
+                </rdf:rest>
+            </rdf:Description>
+        </swrl:body>
+        <swrl:head>
+            <rdf:Description>
+                <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
+                <rdf:first>
+                    <rdf:Description>
+                        <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
+                        <swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0019001"/>
+                        <swrl:argument1 rdf:resource="urn:swrl:var#x"/>
+                        <swrl:argument2 rdf:resource="urn:swrl:var#z"/>
+                    </rdf:Description>
+                </rdf:first>
+                <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
+            </rdf:Description>
+        </swrl:head>
+    </rdf:Description>
     <rdf:Description>
         <rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
         <swrl:body>