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General curation workflow
Nico Matentzoglu edited this page Nov 15, 2018
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- Curate the terms in Google sheets
- Copy relevant rows/columns to a new spreadsheet if necessary (in particular if you only want to commit a subset of the curated terms into the ontology)
- Make sure that column names correspond to the var names in corresponding DOSDP pattern
- Save spreadsheet as TSV
- (You could run a release at this point, but be careful not to commit release files and the changed pattern files in the same commit!)
- Create a new branch, labelled something like abnormalmorphology, or even more specialised
- Commit the latest changes to pattern or ontology-edit file to new branch. Make to keep any given branch incl commits small, so that they can be reviewed as rapidly as possible (i.e. do not mix a change to a pattern and a new release in the same branch!)
- Publish branch on GitHub
- Create pull request
- Ask for reviews and wait for Travis jobs to complete
- When happy, merge into master, delete branch
- Delete branch locally as well to avoid confusion in future
- Pull latest changes from github into your local repository