ODK 1.2.2 upgrade

CLO had to be removed from CL imports, else it should be unaffected.
PR is currently not mirrored anymore, because it is too big. Same ncbitaxon.

.travis.yml

@@ -1,20 +1,15 @@
-language: java
-jdk:
-  - oraclejdk8
+## REMEMBER TO SET UP YOUR GITHUB REPO FOR TRAVIS
+## Go to: https://travis-ci.org/obophenotype for details
+sudo: required
 
-before_script:
-  - mkdir -p bin
-  - export PATH=$PATH:$PWD/bin
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools -O bin/owltools
-  - wget http://build.berkeleybop.org/userContent/owltools/ontology-release-runner -O bin/ontology-release-runner
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools-runner-all.jar -O bin/owltools-runner-all.jar
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools-oort-all.jar -O bin/owltools-oort-all.jar
-  - wget http://build.berkeleybop.org/job/robot/lastSuccessfulBuild/artifact/bin/robot -O bin/robot
-  - wget http://build.berkeleybop.org/job/robot/lastSuccessfulBuild/artifact/bin/robot.jar -O bin/robot.jar
-  - chmod +x bin/*
+services:
+  - docker
+
+before_install:
+  - docker pull obolibrary/odkfull
 
 # command to run tests
-script: cd src/ontology && make test
+script: cd src/ontology && sh run.sh make test
 
 #after_success:
 #  coveralls
@@ -23,7 +18,10 @@ script: cd src/ontology && make test
 branches:
   only:
     - master
+    - test-travis
 
+### Add your own lists here
+### See https://github.com/INCATools/ontology-development-kit/issues/35
 notifications:
   email:
     - [email protected]