separating_gut_meosthelial_from_gut_lining

[dosumis]

• Mesothelial cells of gut now part of serosa
• tidying up partonomy for intestinal lining
• Fixed brush border on enteroycte

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-17/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-17/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

PP cell of intestine http://purl.obolibrary.org/obo/CL_0002680

Removed

• PP cell of intestine SubClassOf intestinal enteroendocrine cell

Added

• PP cell of intestine SubClassOf epithelial cell of alimentary canal

appendix glandular cell http://purl.obolibrary.org/obo/CL_1001585

Added

• appendix glandular cell SubClassOf epithelial cell of large intestine

enterocyte of appendix http://purl.obolibrary.org/obo/CL_0009026

Added

• enterocyte of appendix SubClassOf epithelial cell of large intestine

enteroendocrine cell of anorectum http://purl.obolibrary.org/obo/CL_0009063

Removed

• enteroendocrine cell of anorectum SubClassOf epithelial cell of large intestine

• enteroendocrine cell of anorectum SubClassOf intestinal enteroendocrine cell

Added

• enteroendocrine cell of anorectum SubClassOf enteroendocrine cell

• enteroendocrine cell of anorectum SubClassOf epithelial cell of alimentary canal

enteroendocrine cell of appendix http://purl.obolibrary.org/obo/CL_0009030

Added

• enteroendocrine cell of appendix SubClassOf epithelial cell of large intestine

epithelial cell of anal column http://purl.obolibrary.org/obo/CL_0002634

Removed

• epithelial cell of anal column SubClassOf epithelial cell of large intestine

Added

• epithelial cell of anal column SubClassOf epithelial cell of alimentary canal

epithelial cell of appendix http://purl.obolibrary.org/obo/CL_1000405

Removed

• epithelial cell of appendix SubClassOf epithelial cell of large intestine

Added

• epithelial cell of appendix SubClassOf epithelial cell of alimentary canal

glandular cell of the large intestine http://purl.obolibrary.org/obo/CL_0002658

Removed

• glandular cell of the large intestine SubClassOf epithelial cell of large intestine

Added

• glandular cell of the large intestine SubClassOf epithelial cell of alimentary canal

mesothelial cell of small intestine http://purl.obolibrary.org/obo/CL_0009024

Removed

• mesothelial cell of small intestine SubClassOf epithelial cell of small intestine

Added

• mesothelial cell of small intestine SubClassOf epithelial cell of alimentary canal

paneth cell of anorectum http://purl.obolibrary.org/obo/CL_0009055

Added

• paneth cell of anorectum SubClassOf epithelial cell of large intestine

rectum glandular cell http://purl.obolibrary.org/obo/CL_1001595

Added

• rectum glandular cell SubClassOf epithelial cell of large intestine

stratified squamous epithelial cell of anal canal http://purl.obolibrary.org/obo/CL_0009066

Removed

• stratified squamous epithelial cell of anal canal SubClassOf epithelial cell of large intestine

Added

• stratified squamous epithelial cell of anal canal SubClassOf epithelial cell of alimentary canal

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

enterocyte http://purl.obolibrary.org/obo/CL_0000584

Removed

• enterocyte SubClassOf brush border epithelial cell

Added

• enterocyte SubClassOf has part some brush border

intestinal enteroendocrine cell http://purl.obolibrary.org/obo/CL_1001516

Removed

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (part of some intestinal mucosa)

Added

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (part of some intestinal epithelium)

intestinal epithelial cell http://purl.obolibrary.org/obo/CL_0002563

Removed

• intestinal epithelial cell EquivalentTo epithelial cell and (part of some intestine)

• intestinal epithelial cell SubClassOf part of some intestinal epithelium

Added

• intestinal epithelial cell EquivalentTo epithelial cell and (part of some intestinal epithelium)

mesothelial cell of appendix http://purl.obolibrary.org/obo/CL_0009029

Removed

• mesothelial cell of appendix EquivalentTo mesothelial cell and (part of some vermiform appendix)

Added

• mesothelial cell of appendix EquivalentTo mesothelial cell and (part of some serosa of appendix)

mesothelial cell of colon http://purl.obolibrary.org/obo/CL_0009025

Removed

• mesothelial cell of colon EquivalentTo mesothelial cell and (part of some colon)

Added

• mesothelial cell of colon EquivalentTo mesothelial cell and (part of some serosa of colon)

mesothelial cell of small intestine http://purl.obolibrary.org/obo/CL_0009024

Removed

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (part of some small intestine)

Added

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (part of some serosa of small intestine)

regulation of nitric oxide biosynthetic process http://purl.obolibrary.org/obo/GO_0045428

Added

• Class: regulation of nitric oxide biosynthetic process

[dosumis]

Diffs are a bit odd. Maybe some edits bleeding in from Master?

[dosumis]

Diffs now good.