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Add Image IDs workflow to README #66

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Add Image IDs workflow to README #66

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25 changes: 25 additions & 0 deletions README.rst
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Expand Up @@ -115,6 +115,31 @@ img-04.png dataset01 0.429 4 Cy5 36641

If the target is a Dataset instead of a Project, the ``Dataset Name`` column is not needed.

Alternatively, if you already know the Image IDs, these can be specified
in an ``image`` column, and an ``Image Name`` column will be added.
This is only supported for a Dataset.

dataset.csv::

# header image,d,l,s
Image,ROI_Area,Channel_Index,Channel_Name
1277,0.0469,1,DAPI
1278,0.142,2,GFP
1279,0.093,3,TRITC

This will create an OMERO.table with new ``Image Name`` column:

===== ======== ============= ============ ===========
Image ROI_Area Channel_Index Channel_Name Image Name
===== ======== ============= ============ ===========
1277 0.0469 1 DAPI img-01.png
1278 0.142 2 GFP img-02.png
1279 0.093 3 TRITC img-03.png
===== ======== ============= ============ ===========

NB: Invalid Image IDs (not found in the Dataset) will be changed
to ``-1`` in the table, with blank ``Image Name``.

To add a table to a Screen, the ``CSV`` file needs to specify ``Plate`` name and ``Well``.
If a ``# header`` is specified, column types must be ``well`` and ``plate``.

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