Skip to content

Issues: open2c/bioframe

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 81 Closed
28 Open 81 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bioframe.overlap RAM error
#219 opened Aug 3, 2024 by talipzengin
1
Python 3.13: test_assembly_info fails with AttributeError
#209 opened May 10, 2024 by penguinpee
2
Restore and document additional return_input args for overlap
#197 opened Apr 14, 2024 by nvictus
default dtypes & core.construction
#188 opened Feb 12, 2024 by smitkadvani
4
to_bigwig: wrong format for chromsizes enhancement
#168 opened Aug 18, 2023 by rusch-emma
2
Assorted bugs and possibly undefined behavior in closest bug
#167 opened Jul 16, 2023 by endrebak
1
Suggestion for updating the closest function. enhancement
#163 opened Jun 7, 2023 by WANGchuang715
6
bioframe.assign_view drop_unassigned drops all NaNs? question
#160 opened May 31, 2023 by Phlya
3
reading bigwigs into dataframes enhancement
#153 opened May 25, 2023 by gfudenberg
Passing metadata (/configuration?) through DataFrame.attrs enhancement
#151 opened May 7, 2023 by ivirshup
Strand-aware expand (bedtools slop) enhancement
#144 opened Apr 18, 2023 by ivirshup
13
Bring back GTF attributes parser? enhancement
#141 opened Apr 3, 2023 by nvictus
2
Streamlining input validation for ops enhancement
#140 opened Apr 3, 2023 by nvictus
Alternative DataFrame class(es) for OOC + speed enhancement
#137 opened Mar 6, 2023 by ivirshup
4
strand-aware closest enhancement
#129 opened Nov 7, 2022 by gfudenberg
1
updates for schemas enhancement
#123 opened Sep 28, 2022 by gfudenberg
4 tasks
8
improve documentation for overlap "return_overlap" argument enhancement
#122 opened Sep 28, 2022 by gonzalobenegas
3
bin-table operations enhancement
#116 opened Jun 15, 2022 by agalitsyna
5 tasks
1
make_viewframe takes forever on 100_000 entries enhancement
#114 opened Mar 18, 2022 by sergpolly
1
should we add is_equal to checks for frames comparison (the way we want it) ? question
#97 opened Sep 17, 2021 by sergpolly
1
behavior of on=[] enhancement
#91 opened Aug 26, 2021 by gfudenberg
2
add error chaining for is_viewframe enhancement
#88 opened Aug 17, 2021 by gfudenberg
Creating a more extensive and generative test suite? enhancement
#43 opened Jun 12, 2020 by endrebak
Find a way to ensure alignment of two interval tables. enhancement
#37 opened May 18, 2020 by golobor
5
Make function coverage_track() to create base-pair resolution coverage tracks enhancement
#36 opened May 18, 2020 by golobor
1
ProTip! Updated in the last three days: updated:>2024-11-12.