v0.3.0
A major update of the pipeline and the config syntax.
- Simplify and speed up the pipeline by merging several groups of processes.
- Greatly reduce the storage requirements down to ~2x of the fastq.gz size.
- Introduce custom pair filtering during binning.
- Make .mcools with custom resolutions.
- Speed up the .sra->.fastq.gz conversion.
- Rename multiple config options.
- Switch from pbgzip to native bgzip multithreading.
- Allow users to change the location of the temp files.
- Post the list of the packages inside the docker on github.