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v0.3.0

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@golobor golobor released this 02 Jan 05:52
· 133 commits to master since this release

A major update of the pipeline and the config syntax.

  • Simplify and speed up the pipeline by merging several groups of processes.
  • Greatly reduce the storage requirements down to ~2x of the fastq.gz size.
  • Introduce custom pair filtering during binning.
  • Make .mcools with custom resolutions.
  • Speed up the .sra->.fastq.gz conversion.
  • Rename multiple config options.
  • Switch from pbgzip to native bgzip multithreading.
  • Allow users to change the location of the temp files.
  • Post the list of the packages inside the docker on github.