Bump Pandas Version (#317)

* bumped pandas to a minimum version not a singular one
* fix spelling errors to appease codespell

ecat_validation/Readme.md

@@ -116,4 +116,4 @@ pip install pypet2bids
 ecatpet2bids ECAT7_multiframe.v.gz --convert
 ```
 
-This illustrates [what metadata are extracted from the ecat file](https://github.com/openneuropet/PET2BIDS/blob/main/ecat_validation/ECAT7_multiframe.json) - which does not comform with BIDS because radiochemistry and pharmaceutical metadata are missing.
+This illustrates [what metadata are extracted from the ecat file](https://github.com/openneuropet/PET2BIDS/blob/main/ecat_validation/ECAT7_multiframe.json) - which does not conform with BIDS because radiochemistry and pharmaceutical metadata are missing.

matlab/dcm2niix4pet.m

@@ -28,7 +28,7 @@ function dcm2niix4pet(FolderList,MetaList,varargin)
 %   - *p*          = 'y';    % Philips precise float (not display) scaling (y/n, default y)
 %   - *v*          = 1;      % verbose (n/y or 0/1/2, default 0) [no, yes, logorrheic]
 %   - *w*          = 2;      % write behavior for name conflicts (0,1,2, default 2: 0=skip duplicates, 1=overwrite, 2=add suffix)
-%   - *x*          = 'n';    % crop 3D acquisitions (y/n/i, default n, use 'i'gnore to neither crop nor rotate 3D acquistions)
+%   - *x*          = 'n';    % crop 3D acquisitions (y/n/i, default n, use 'i'gnore to neither crop nor rotate 3D acquisitions)
 %   - *z*          = 'n';    % gz compress images (y/o/i/n/3, default y) [y=pigz, o=optimal pigz, i=internal:miniz, n=no, 3=no,3D]
 %
 % .. code-block::
@@ -91,7 +91,7 @@ function dcm2niix4pet(FolderList,MetaList,varargin)
 p          = 'y';    % Philips precise float (not display) scaling (y/n, default y)
 v          = 1;      % verbose (n/y or 0/1/2, default 0) [no, yes, logorrheic]
 w          = 2;      % write behavior for name conflicts (0,1,2, default 2: 0=skip duplicates, 1=overwrite, 2=add suffix)
-x          = 'n';    % crop 3D acquisitions (y/n/i, default n, use 'i'gnore to neither crop nor rotate 3D acquistions)
+x          = 'n';    % crop 3D acquisitions (y/n/i, default n, use 'i'gnore to neither crop nor rotate 3D acquisitions)
 z          = 'y';    % gz compress images (y/o/i/n/3, default y) [y=pigz, o=optimal pigz, i=internal:miniz, n=no, 3=no,3D]
 
 %% check dcm2nii inputs

pypet2bids/pypet2bids/ecat_cli.py

@@ -174,7 +174,7 @@ def cli():
         help="Update/create a json sidecar file from an ECAT given a path to that each "
         "file,. e.g."
         "ecatpet2bids ecatfile.v --update path/to/sidecar.json "
-        "additionally one can pass metadat to the sidecar via inclusion of the "
+        "additionally one can pass metadata to the sidecar via inclusion of the "
         "--kwargs flag or"
         "the --metadata-path flag. If both are included the --kwargs flag will "
         "override any"
@@ -201,7 +201,7 @@ def cli():
 into the output from ecatpet2bids. Additional arguments/fields are passed via the kwargs flag
 in key value pairs.
 
-example 1 (Passing PET metadat via the --kwargs argument):
+example 1 (Passing PET metadata via the --kwargs argument):
     
     # Note `#` denotes a comment
     

pypet2bids/pyproject.toml

@@ -26,7 +26,7 @@ pydicom = "^2.2.2"
 openpyxl = "^3.0.9"
 xlrd = "^2.0.1"
 json-maj = "^0.0.8"
-pandas = "^1.4.4"
+pandas = ">=1.4.4"
 pyxlsb = "^1.0.9"
 joblib = "^1.2.0"
 toml = ">=0.10.2"

spreadsheet_conversion/blood/pmod/convert_pmod_to_blood.m

@@ -79,7 +79,7 @@ function convert_pmod_to_blood(varargin)
 
 %% deal with input file
 if nargin == 0
-    [filenames, pathnames] = uigetfile({'*.bld','speadsheet';'*.txt','text'}, 'Pick the pmod files (N=2 or 3)', 'multiselect','on');
+    [filenames, pathnames] = uigetfile({'*.bld','spreadsheet';'*.txt','text'}, 'Pick the pmod files (N=2 or 3)', 'multiselect','on');
     if isequal(filenames, 0) || isequal(pathnames, 0)
         disp('Selection cancelled');
         return

spreadsheet_conversion/many_subjects_sheet/README.mkd

@@ -30,4 +30,4 @@ From the 2nd row, values are entered. When multiple values are required, these a
 
 # format
 
-While the current templates and examples are in .xlsx (microsoft excel),  other speadsheet formats can be used.
+While the current templates and examples are in .xlsx (microsoft excel),  other spreadsheet formats can be used.

spreadsheet_conversion/single_subject_sheet/README.mkd

@@ -10,4 +10,4 @@ From the 2nd row, values are entered. When multiple values are required, these a
 
 # format
 
-While the current template and example are in .xlsx (microsoft excel),  other speadsheet formats can be used.
+While the current template and example are in .xlsx (microsoft excel),  other spreadsheet formats can be used.