[GR-57817] Fix JDK restricted access warnings and other warnings #3700
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* Such as: WARNING: A restricted method in java.lang.System has been called WARNING: java.lang.System::load has been called by com.oracle.truffle.polyglot.JDKSupport in module org.graalvm.truffle (file:graal/truffle/mxbuild/jdk24/dists/jdk21/truffle-api.jar) WARNING: Use --enable-native-access=org.graalvm.truffle to avoid a warning for callers in this module WARNING: Restricted methods will be blocked in a future release unless native access is enabled
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