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    • Kotlin
      Apache License 2.0
      0214Updated Oct 27, 2024Oct 27, 2024
    • Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      Apache License 2.0
      8437610Updated Oct 27, 2024Oct 27, 2024
    • Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      R
      Apache License 2.0
      13233Updated Oct 27, 2024Oct 27, 2024
    • MIRA-NF

      Public
      Nextflow
      MIT License
      1301Updated Oct 27, 2024Oct 27, 2024
    • SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      Java
      Creative Commons Zero v1.0 Universal
      545836418Updated Oct 27, 2024Oct 27, 2024
    • ixa

      Public
      Rust
      Apache License 2.0
      08910Updated Oct 27, 2024Oct 27, 2024
    • ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      Kotlin
      Creative Commons Zero v1.0 Universal
      40721.3k111Updated Oct 27, 2024Oct 27, 2024
    • A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.
      Python
      Apache License 2.0
      04143Updated Oct 27, 2024Oct 27, 2024
    • phoenix

      Public
      🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      Apache License 2.0
      195692Updated Oct 27, 2024Oct 27, 2024
    • eMKF

      Public
      SAS
      Apache License 2.0
      1200Updated Oct 26, 2024Oct 26, 2024
    • Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      2600Updated Oct 26, 2024Oct 26, 2024
    • Go
      Apache License 2.0
      0501Updated Oct 26, 2024Oct 26, 2024
    • The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      Python
      Apache License 2.0
      02136Updated Oct 26, 2024Oct 26, 2024
    • An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
      R
      Apache License 2.0
      216765Updated Oct 26, 2024Oct 26, 2024
    • This repository is created for NEDSS Helm charts.
      Smarty
      Apache License 2.0
      1206Updated Oct 26, 2024Oct 26, 2024
    • HCL
      Apache License 2.0
      0200Updated Oct 26, 2024Oct 26, 2024
    • Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      Apache License 2.0
      2606Updated Oct 26, 2024Oct 26, 2024
    • Java
      Apache License 2.0
      0000Updated Oct 26, 2024Oct 26, 2024
    • Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      Apache License 2.0
      0002Updated Oct 26, 2024Oct 26, 2024
    • Modeling pipeline config validation microservice.
      Python
      Apache License 2.0
      0001Updated Oct 26, 2024Oct 26, 2024
    • Java
      21807Updated Oct 26, 2024Oct 26, 2024
    • Intelligent Data Workflow Automation
      TypeScript
      Apache License 2.0
      21474Updated Oct 25, 2024Oct 25, 2024
    • Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      Go
      Apache License 2.0
      374219Updated Oct 25, 2024Oct 25, 2024
    • Bringing together healthcare providers by reducing the connection burden.
      Groovy
      Apache License 2.0
      5111647Updated Oct 25, 2024Oct 25, 2024
    • R
      Apache License 2.0
      01126Updated Oct 25, 2024Oct 25, 2024
    • phdi

      Public
      HTML
      Creative Commons Zero v1.0 Universal
      143426212Updated Oct 25, 2024Oct 25, 2024
    • Python
      Apache License 2.0
      0091Updated Oct 25, 2024Oct 25, 2024
    • Python
      Apache License 2.0
      0050Updated Oct 25, 2024Oct 25, 2024
    • A repository run by the US CDC to collect forecast data for the weekly new COVID-19 hospitalizations.
      Apache License 2.0
      1123Updated Oct 25, 2024Oct 25, 2024
    • RSTr

      Public
      Rate Stabilizing Tool R Package: Gibbs Samplers for Bayesian Spatiotemporal CAR Models
      R
      Apache License 2.0
      0200Updated Oct 25, 2024Oct 25, 2024