Repositories list

• emln

  Public
  An R package for handling and manipulating multilayer network data, mainly for ecological networks

  modelingdata-structuresecology+ 3network-analysisnetworksciencemultilayer-networks

  R

  •

  Creative Commons Attribution 4.0 International

  •1•6•2•0•Updated Jan 14, 2025Jan 14, 2025

• lab_website

  Public
  Our lab website

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•1•Updated Jan 8, 2025Jan 8, 2025

• eco_ILP

  Public
  Code and data for the paper "Inductive link prediction boosts data availability and enables cross-community link prediction in ecological networks"

  machine-learningpaperecology+ 2link-predictionecological-networks

  Python

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• Sequential_LP

  Public
  We present a temporal optimal link prediction method that is based on the stacking link prediction method.

  Python

  •

  MIT License

  •3•0•0•0•Updated Dec 31, 2024Dec 31, 2024

• rumen_microbiome_structure

  Public
  this is a reiteration of microbiome_structure_v2 with cleaner folder tree and fixed intralayer edge weights.

  HTML

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• spatial_modularity_in_the_canary_islands

  Public
  Code and data accompanying the paper "Local and regional processes drive distance decay in structure in a spatial multilayer plant-pollinator network"

  ecologymultilayer-networksecological-networks

  R

  •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• link_prediction_project

  Public
  Ofir and Eden Project of link prediction

  Jupyter Notebook

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• infomap_ecology_package

  Public
  Package with functions to handle network data and run Infomap, inspired by ecological networks

  flowrr-package+ 5ecologynetwork-analysismultilayer-networkinfomapecological-networks

  R

  •2•26•13•0•Updated Jun 2, 2024Jun 2, 2024

• cancer-networks

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Mar 28, 2024Mar 28, 2024

• metabolic_corrs_networks_analysis

  Public
  sharon's project- creating networks of correlations between metabolites in different bacteria strains (before/after evolution) and analyzing them to catch the effect of evolution

  R

  •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

• Plasmid_multilayer_networks

  Public
  Data and scripts for analysis in Shapiro et al., "Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways of Gene Transmission"

  R

  •

  MIT License

  •0•1•0•0•Updated Mar 28, 2023Mar 28, 2023

• Poll_Seed-disp_Multilayer_Patagonia

  Public
  Codes and data to

  R

  •0•0•0•0•Updated Jan 16, 2023Jan 16, 2023

• COVID19_vaccine_model

  Public
  R

  •0•0•0•0•Updated Aug 20, 2021Aug 20, 2021

• network-navigator

  Public
  Interactive hierarchical network navigator

  Python

  •

  MIT License

  •1•0•11•0•Updated Jun 20, 2021Jun 20, 2021

• CRISPR_networks

  Public
  crisprecologycrispr-cas9+ 5bacteriaimmunityspacervirus-strainsprotospacer

  R

  •0•1•0•0•Updated Aug 5, 2020Aug 5, 2020