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@NPPC-UK National Plant Phenomics Centre

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    16 repositories

    • ct_scanner_plotting

      Public
      Plotting data from the microCT scanner
      Python
      •0•1•5•0•Updated May 1, 2021May 1, 2021

    • Capitula-Counter

      Public
      This pipeline automatically counts the number of Sphagnum capitula in your images and produces crops of all the images, annotated images, which can be used to check the annotations, a CSV-file of the annotations, which can be used in annotation software (i.e. VGG), and a CSV-file with the automated count and the corrected count for all images.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • Portable_Imaging_Rig

      Public
      Software for a portable camera system which can make use of DSLR's using GPhoto2
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 17, 2020Sep 17, 2020

    • Lepton_touchscreen

      Public
      A Raspberry Pi touchscreen interface for the FLIR Lepton thermal imager. Written in Python and Kivy.
      Python
      •
      GNU General Public License v3.0
      •2•4•0•0•Updated Aug 11, 2020Aug 11, 2020

    • disk_creator

      Public
      A script for creating a bootable USB drive from a debian based distro, with persitence and data partition
      Shell
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Aug 23, 2019Aug 23, 2019

    • microCT_grain_analyser

      Public
      Software for processing output of Scanco uCT machines/ any ISQ or TIF producing machine, and producing data. See instructions.pdf for full explaination.
      bioinformaticsbiologyimage-processingplants3dmicro-ctct-scans
      MATLAB
      •
      Other
      •1•7•1•0•Updated Jun 12, 2019Jun 12, 2019

    • photography-cube-plans

      Public
      CAD models and instructions for building a small photography cube
      Other
      •1•0•0•0•Updated Mar 25, 2019Mar 25, 2019

    • starlight-express-linux

      Public
      C program to control and query the status of a startlight xpress filterwheel.
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 1, 2019Mar 1, 2019

    • PAT64V3_cp

      Public
      A cross platform port of PAT64V3
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 7, 2018Nov 7, 2018

    • Gravimetrics

      Public
      Software Controller for Gravimetrics System
      sciencebiologyplants
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 22, 2018Jun 22, 2018

    • PAT64V3_W8

      Public
      The version of PAT64 that Jiwan used to analyse data for the W8 experiment
      phenotypingplant-growth
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 18, 2018Jun 18, 2018

    • micro-CT-analysing-library

      Public
      Python
      •0•0•0•0•Updated May 31, 2018May 31, 2018

    • ISQ-Reader

      Public
      ISQ Reader for Matlab and Octave
      MATLAB
      •
      Other
      •1•1•0•0•Updated Jan 8, 2018Jan 8, 2018

    • wireless_sensors

      Public
      Moteino based wireless sensors for measuring greenhouse temperature and light levels.
      Eagle
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 20, 2017Feb 20, 2017

    • OpenCV_Auto_White_Balance

      Public
      Auto white balancing software that works well with images of plants
      C++
      •0•3•0•0•Updated Feb 1, 2017Feb 1, 2017

    • PlantReader

      Public
      Plant imaging with SLR cameras and RFID tag reader
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 19, 2016Feb 19, 2016