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@OHDSI Observational Health Data Sciences and Informatics

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    310 repositories

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •32•38•19•1•Updated Nov 8, 2024Nov 8, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •6•12•39•3•Updated Nov 8, 2024Nov 8, 2024

    • ConceptSetDiagnostics

      Public
      Package to assist with design diagnostics for concept set
      R
      •
      Other
      •1•0•1•0•Updated Nov 7, 2024Nov 7, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •169•130•132•23•Updated Nov 7, 2024Nov 7, 2024

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•1•27•2•Updated Nov 7, 2024Nov 7, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •14•14•1•3•Updated Nov 7, 2024Nov 7, 2024

    • TxPathways

      Public
      [under development] OHDSI tool to build treatment history of population and derive summary statistics of patterns of treatment
      R
      •
      Apache License 2.0
      •2•0•2•1•Updated Nov 7, 2024Nov 7, 2024

    • Themis

      Public
      Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.
      Apache License 2.0
      •9•28•51•1•Updated Nov 7, 2024Nov 7, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•188•66•3•Updated Nov 7, 2024Nov 7, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•9•0•Updated Nov 7, 2024Nov 7, 2024

    • Andromeda

      Public
      AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
      hades
      R
      •11•11•17•0•Updated Nov 7, 2024Nov 7, 2024

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •49•41•25•1•Updated Nov 7, 2024Nov 7, 2024

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      data-quality
      JavaScript
      •
      Apache License 2.0
      •96•143•53•6•Updated Nov 7, 2024Nov 7, 2024

    • CohortSymmetry

      Public
      R
      •
      Apache License 2.0
      •0•1•22•1•Updated Nov 6, 2024Nov 6, 2024

    • ShinyProxyDeploy

      Public
      Deploy OHDSI Shiny apps to results.ohdsi.org
      3•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •137•272•218•18•Updated Nov 6, 2024Nov 6, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•2•19•0•Updated Nov 6, 2024Nov 6, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•2•Updated Nov 6, 2024Nov 6, 2024

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•5•Updated Nov 5, 2024Nov 5, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •12•6•19•4•Updated Nov 5, 2024Nov 5, 2024

    • AresIndexer

      Public
      R package that creates the index and relevant files for an Ares deployment.
      R
      •
      Apache License 2.0
      •5•1•17•0•Updated Nov 5, 2024Nov 5, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•11•0•Updated Nov 5, 2024Nov 5, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •6•16•19•2•Updated Nov 5, 2024Nov 5, 2024

    • EvidenceNetwork

      Public
      Apache License 2.0
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•11•20•2•Updated Nov 4, 2024Nov 4, 2024

    • WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •90•184•106•4•Updated Nov 4, 2024Nov 4, 2024

    • HealthSystems

      Public
      [Under development] Health Systems Interest Group
      PLpgSQL
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•30•3•Updated Nov 1, 2024Nov 1, 2024

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•7•0•Updated Nov 1, 2024Nov 1, 2024

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•10•140•2•Updated Nov 1, 2024Nov 1, 2024