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    29 repositories

    • sparc-curation

      Public
      code and files for SPARC curation workflows
      Python
      •
      MIT License
      •12•14•48•1•Updated Nov 15, 2024Nov 15, 2024

    • NIF-Ontology

      Public
      NIF Standard Ontologies (NIFSTD)
      neuroscienceowlontology
      Creative Commons Attribution 4.0 International
      •17•54•148•4•Updated Nov 12, 2024Nov 12, 2024

    • quantitative-db

      Public
      A flexible database for storing arbitrary quantitative measurements
      Python
      •
      MIT License
      •0•0•3•4•Updated Nov 7, 2024Nov 7, 2024

    • key_resource_table_extractor

      Public
      Python
      •0•1•0•0•Updated Oct 12, 2024Oct 12, 2024

    • table_lm

      Public
      Python
      •0•0•0•0•Updated Oct 5, 2024Oct 5, 2024

    • API-Handbook-Docs

      Public
      Repository for API Handbook Gitbook
      0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • SPARC-Citations

      Public
      Scripts to aggregate SPARC Citation information
      Python
      •
      Other
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • scibot

      Public
      curation workflow automation and coordination
      Python
      •
      Apache License 2.0
      •12•41•23•2•Updated Aug 29, 2024Aug 29, 2024

    • paperpdf2xml

      Public
      A set of Python 3 CLI to convert scientific papers in PDF format to XML documents with sections and tables.
      Python
      •
      Other
      •0•2•0•0•Updated Nov 15, 2023Nov 15, 2023

    • Foundry-Docs

      Public
      Gitbook repository for Foundry ecosystem documentation
      Other
      •0•0•1•0•Updated Aug 18, 2023Aug 18, 2023

    • API-Handbook

      Public
      Gitbook with information and documentation of APIs and services provided by FAIR Data Informatics Lab
      Other
      •5•1•0•2•Updated Jun 1, 2023Jun 1, 2023

    • SciGraph

      Public
      A Neo4j backed ontology store
      Java
      •
      Apache License 2.0
      •48•0•0•1•Updated Feb 17, 2023Feb 17, 2023

    • dkNET-Repository-Finder-Data

      Public
      Repository for the data behind the repository finder
      Shell
      •
      Other
      •0•1•0•0•Updated Dec 19, 2022Dec 19, 2022

    • resource_disambiguator

      Public
      Batch processes for RDW
      Java
      •
      Other
      •2•2•0•10•Updated Dec 6, 2022Dec 6, 2022

    • bio_electra

      Public
      Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining
      transformersnamed-entity-recognitionquestion-answeringlanguage-modelrelation-extractionbiomedical-text-mining
      Python
      •
      Other
      •1•4•0•1•Updated Oct 24, 2022Oct 24, 2022

    • Antibody-Watch

      Public
      Antibody Watch: Text Mining Antibody Specificity from the Literature
      natural-language-processingtext-miningbioinformaticsliterature-miningantibody-annotation
      Jupyter Notebook
      •
      Other
      •1•7•0•0•Updated Jul 9, 2021Jul 9, 2021

    • connectivity-re

      Public
      Code/data repository for ANS connectivity relation extraction
      Java
      •0•0•0•0•Updated Apr 20, 2021Apr 20, 2021

    • bio-answerfinder

      Public
      A question answering system for biomedical literature
      Java
      •
      Other
      •0•9•0•0•Updated Mar 26, 2021Mar 26, 2021

    • CINERGI-PROV

      Public
      Data from CINERGI pipeline and clients to connect to the server
      JavaScript
      •
      Other
      •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020

    • FAIR-Rich-Metadata

      Public
      Specification of FAIR Rich Metadata
      Other
      •0•0•0•0•Updated Mar 17, 2020Mar 17, 2020

    • python-datasets-interface

      Public
      Python
      •
      Other
      •1•1•1•0•Updated Feb 3, 2020Feb 3, 2020

    • BICCN-Infrastructure-Draft

      Public
      Documentation about BICCN Infrastructure and Data Policies
      10•0•0•0•Updated Oct 11, 2019Oct 11, 2019

    • Navigator

      Public
      A javascript toolkit to embed data and literature search utilizing the Neuroscience Information Framework REST search services.
      JavaScript
      •
      Other
      •1•0•0•0•Updated Apr 16, 2019Apr 16, 2019

    • ontoquest

      Public
      Ontoquest webservice
      Java
      •
      Other
      •0•0•2•0•Updated Apr 16, 2019Apr 16, 2019

    • BulkChanger

      Public
      A tool to perform a mass change to a desired element in a desired property in a MediaWiki that implements Semantic MediaWiki and Semantic Forms.
      Java
      •
      Other
      •0•0•0•0•Updated Apr 16, 2019Apr 16, 2019

    • rdw

      Public
      Resource Disambiguator Web
      Groovy
      •
      Other
      •0•1•0•0•Updated Apr 16, 2019Apr 16, 2019

    • SciCrunch-Portal

      Public
      SciCrunch Portal
      PHP
      •
      Other
      •0•3•3•0•Updated Apr 16, 2019Apr 16, 2019

    • BioMart-harvester

      Public
      A BioMart harvester written in PHP to crawl BioMart repositories.
      Other
      •0•0•0•0•Updated Apr 16, 2019Apr 16, 2019

    • OAI-PMH-harvester

      Public
      An OAI-PMH harvester written in PHP to crawl OAI repositories. Includes ability to update and restart prior crawls.
      PHP
      •
      Other
      •0•0•2•0•Updated Apr 16, 2019Apr 16, 2019