Repositories list

• TRDW.jl

  Public
  This is a Pluto environment with FunSQL for use in Research Requests

  Julia

  •

  Other

  •0•2•26•2•Updated Nov 8, 2024Nov 8, 2024

• Broadsea-GISland

  Public
  Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.

  R

  •

  Apache License 2.0

  •59•0•0•0•Updated Oct 13, 2024Oct 13, 2024

• CVB

  Public
  CVB, or Custom Vocabulary Builder, is designed to interface with SSSOM-based mappings hosted in GoogleSheets together with self-hosted runners in the Tufts Azure environment to create custom representations of semantic concepts with ID assignments in OMOP CDM format.

  JavaScript

  •0•0•1•0•Updated Oct 11, 2024Oct 11, 2024

• GIS

  Public
  This is a fork of the OHDSI GIS repository

  R

  •

  Apache License 2.0

  •9•0•0•1•Updated Oct 11, 2024Oct 11, 2024

• Achilles

  Public
  Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

  R

  •121•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• TRDW-Guides

  Public
  Notebook Guides to OMOP-shaped TRDW

  Julia

  •

  Apache License 2.0

  •0•0•3•0•Updated Sep 6, 2024Sep 6, 2024

• DataQualityDashboard

  Public
  A tool to help improve data quality standards in observational data science.

  JavaScript

  •

  Apache License 2.0

  •96•0•0•0•Updated Mar 14, 2024Mar 14, 2024

• TRDW-Handbook

  Public
  This is customer-facing documentation for the Informatics team at Tufts CTSI.

  Makefile

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• N3C-CodeSets

  Public
  A mirror of the N3C code set repository

  Python

  •0•1•0•0•Updated Mar 12, 2024Mar 12, 2024

• csv2xlsx

  Public archive
  Trivial command line program to produce password protected xlsx file using Apache POI

  Java

  •

  MIT License

  •0•0•0•0•Updated Mar 2, 2024Mar 2, 2024

• jupyter-pluto-proxy

  Public
  Jupyter Notebook with Pluto using jupyter-server-proxy

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •7•0•0•0•Updated Nov 24, 2023Nov 24, 2023

• OHNLPBackbone

  Public
  Provides backbone infrastructure elements for OHNLP toolsets.

  Java

  •

  Apache License 2.0

  •7•0•0•0•Updated Nov 15, 2023Nov 15, 2023

• ZipFile.jl

  Public
  Fork of ZipFile.jl so one could set deflate level

  Julia

  •

  Other

  •45•0•0•0•Updated Oct 18, 2023Oct 18, 2023

• OHNLPMedTagger

  Public
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.

  Java

  •

  Apache License 2.0

  •19•1•0•0•Updated Oct 9, 2023Oct 9, 2023

• N3C

  Public
  Tufts Medicine's Participation in the National Covid Cohort Collaborative

  Jupyter Notebook

  •

  Apache License 2.0

  •1•0•2•1•Updated Aug 15, 2023Aug 15, 2023

• AresIndexer

  Public
  R package that creates the index and relevant files for an Ares deployment.

  R

  •

  Apache License 2.0

  •5•0•0•0•Updated May 11, 2023May 11, 2023

• OHDSI-WorkPackage-Repository

  Public
  Provide a clearinghouse for connecting work needs with qualified and interested contributors in the OHDSI community

  Apache License 2.0

  •0•0•9•0•Updated May 8, 2023May 8, 2023

• CohortDiagnostics

  Public
  An R package for performing various cohort diagnostics.

  R

  •49•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• MIMIC2OMOP

  Public
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

  Python

  •

  Apache License 2.0

  •23•0•0•0•Updated Apr 26, 2023Apr 26, 2023

• stcm

  Public
  Source_to_concept_map table

  0•0•0•0•Updated Apr 7, 2023Apr 7, 2023

• PublicTest

  Public
  0•0•0•0•Updated Mar 30, 2023Mar 30, 2023