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@cbib Centre de Bioinformatique de Bordeaux

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    17 repositories

    • TrialMatchAI

      Public
      TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI
      pythonartificial-intelligencecancer-genomicsclinical-trialspersonalized-medicinepersonalized-recommendationlarge-language-models
      Jupyter Notebook
      •0•4•0•0•Updated Oct 18, 2024Oct 18, 2024

    • DIMet

      Public
      Differential analysis of targeted Isotope-labeled Metabolomics data
      pythonmetabolomicsdifferential-expressionisotope-labeling-experimentsmetabolomics-pipeline
      Python
      •
      MIT License
      •2•3•0•0•Updated Sep 23, 2024Sep 23, 2024

    • Stage_CBIB

      Public
      R
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • ProteomX

      Public
      Statistical and Functional analysis and interpretation of proteomics data
      Python
      •
      MIT License
      •1•0•28•6•Updated Sep 4, 2024Sep 4, 2024

    • TraceGroomer

      Public
      Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.
      Python
      •
      MIT License
      •1•1•0•0•Updated Aug 6, 2024Aug 6, 2024

    • TempAI

      Public
      Python
      •0•1•0•0•Updated Jul 18, 2024Jul 18, 2024

    • dypfish

      Public
      Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images
      Python
      •
      Other
      •1•2•8•5•Updated Oct 3, 2023Oct 3, 2023

    • SalienceNet

      Public
      Python
      •
      MIT License
      •1•8•0•0•Updated Jul 31, 2023Jul 31, 2023

    • linda

      Public
      Web application for managing experimental and environmental metadata for plant experiments
      nodejsphenotypingarangodbontologiesangular8miappe
      TypeScript
      •
      MIT License
      •0•2•13•19•Updated Jul 19, 2023Jul 19, 2023

    • tflex

      Public
      R
      •0•0•0•0•Updated May 10, 2023May 10, 2023

    • virhunter

      Public
      Deep Learning method for novel virus detection in sequencing data
      Python
      •
      Other
      •0•6•0•0•Updated Apr 25, 2023Apr 25, 2023

    • decontaminator

      Public
      deep learning contamination filtering tool
      genomicsrnaseqvirusesdeep-learning
      Python
      •
      Other
      •0•0•0•0•Updated Jan 22, 2023Jan 22, 2023

    • COBRA

      Public
      Multi-omics data integrative web application for plant-virus resistance gene
      HTML
      •3•1•0•5•Updated Sep 1, 2022Sep 1, 2022

    • DeepMeta

      Public
      Deep Learning network to segment lungs and metastases in mouse MRI images.
      Python
      •
      MIT License
      •1•1•0•1•Updated Jul 20, 2022Jul 20, 2022

    • DeepSpot

      Public
      DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
      Python
      •
      Other
      •3•13•0•0•Updated Dec 1, 2021Dec 1, 2021

    • MICADo

      Public
      Looking for mutations in PacBio cancer data: an alignment-free method
      Python
      •
      Other
      •2•8•1•0•Updated Nov 10, 2016Nov 10, 2016

    • MIX

      Public
      MIX: Combining multiple assemblies from NGS data
      Python
      •7•12•4•0•Updated Apr 14, 2016Apr 14, 2016