Repositories list

• qtl2api

  Public
  Wrapper around rqtl/qtl2

  R

  •

  Other

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• simplerestrserve

  Public
  A very simple Docker image for RestRserve

  R

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• scriptloader

  Public
  JavaScript loading utility

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• g2gtools

  Public
  Personal diploid genome creation and coordinate conversion

  Python

  •9•22•9•1•Updated Sep 25, 2024Sep 25, 2024

• gbrs

  Public
  Genotype-free genome reconstruction and ASE quantification

  Python

  •

  MIT License

  •3•8•2•3•Updated Sep 19, 2024Sep 19, 2024

• intermediate

  Public
  small R utility for mediation analysis

  R

  •13•5•0•1•Updated Aug 5, 2024Aug 5, 2024

• qtl2web

  Public
  HTML

  •

  MIT License

  •0•0•0•4•Updated May 21, 2024May 21, 2024

• qtl2rest

  Public
  Docker container for qtl2api R library.

  R

  •0•0•0•0•Updated Apr 13, 2024Apr 13, 2024

• ensimplR

  Public
  R

  •0•1•0•0•Updated Jan 30, 2024Jan 30, 2024

• emase

  Public
  Expectation-Maximization algorithm for Allele-Specific Expression

  Python

  •

  GNU General Public License v3.0

  •13•21•5•1•Updated May 9, 2023May 9, 2023

• alntools

  Public
  Preprocess bam file into a compressed alignment incidence matrix (equivalence class)

  Python

  •

  MIT License

  •1•2•5•3•Updated Apr 22, 2023Apr 22, 2023

• ensimpl

  Public
  Simple API into Ensembl

  Python

  •1•0•0•2•Updated Feb 14, 2023Feb 14, 2023

• emase-zero

  Public
  C++ Implementation of EMASE

  expressionexpectation-maximization-algorithmallele-specific+ 1allele-specific-expression

  C++

  •

  MIT License

  •2•5•2•1•Updated Jan 17, 2023Jan 17, 2023

• scBASE

  Public
  A set of tools for accurate quantitation of single-cell allele-specific expression

  Python

  •

  MIT License

  •1•12•3•2•Updated Dec 26, 2022Dec 26, 2022

• qtlapi

  Public
  R

  •0•4•0•0•Updated Dec 1, 2021Dec 1, 2021

• scRATE

  Public
  Bayesian model selection to detect zero-inflated genes

  R

  •1•8•1•0•Updated Aug 10, 2020Aug 10, 2020

• ensimplR-old

  Public
  Simple R API into ensimpl data

  R

  •

  MIT License

  •0•2•0•0•Updated Mar 20, 2020Mar 20, 2020

• DeSNP

  Public
  Tools for the CGD DeSNPing pipeline

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 20, 2019Aug 20, 2019

• aseQTL

  Public
  Allele-specific expression QTL (aseQTL) package

  R

  •0•1•0•0•Updated Jun 21, 2019Jun 21, 2019

• svensonDO850-analysis

  Public
  A collection of scripts for analyzing the Svenson DO850 data

  R

  •0•0•0•0•Updated May 10, 2019May 10, 2019

• mouse_map_converter

  Public
  HTML

  •0•0•0•0•Updated Jan 2, 2019Jan 2, 2019

• ImageEchelon

  Public
  Tool to quantify images where meaningful differences are discernible by eye, but difficult to quantify using traditional methods.

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Oct 15, 2018Oct 15, 2018

• cc_proteins

  Public
  CC Protein Viewer. THERE IS CURRENTLY NO DOCUMENTATION.

  HTML

  •0•0•0•0•Updated Sep 27, 2018Sep 27, 2018

• qtl2tricks

  Public
  R

  •1•1•0•0•Updated Jul 25, 2018Jul 25, 2018

• msbwt

  Public
  A python toolkit for building and querying multi-string BWTs

  Python

  •

  MIT License

  •7•0•0•0•Updated Jun 21, 2018Jun 21, 2018

• how-to-guide

  Public
  A how-to guide to the Churchill Lab, The Jackson Laboratory, and Bar Harbor.

  1•1•0•0•Updated Jun 5, 2018Jun 5, 2018

• test

  Public
  0•0•0•0•Updated May 23, 2018May 23, 2018

• qtl-viewer

  Public archive
  HTML

  •0•0•0•1•Updated Apr 17, 2018Apr 17, 2018

• Utilities

  Public
  R code to share among the group.

  R

  •2•1•0•0•Updated Mar 9, 2018Mar 9, 2018

• ensimpl_snps

  Public
  Python

  •0•0•0•0•Updated Jan 31, 2018Jan 31, 2018