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    15 repositories

    • iAM.AMR.MODEL.FRAMEWORK

      Public
      The iAM.AMR Model Framework contains the functions and indices required to build and run an iAM.AMR model in Analytica.
      0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • iAM.AMR.MODEL

      Public
      The iAM.AMR model templates, from which all other models are built.
      0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • CEDAR

      Public
      The CEDAR Web App
      Python
      •0•0•6•0•Updated Jun 28, 2024Jun 28, 2024

    • sawmill

      Public
      An R package used to prepare queries from CEDAR (timber) for use in the iAM.AMR models
      cedar
      R
      •
      GNU General Public License v3.0
      •1•1•7•0•Updated Jun 21, 2024Jun 21, 2024

    • start_here

      Public
      Welcome to the iAM.AMR Project's GitHub
      for-our-team
      0•0•0•0•Updated May 15, 2024May 15, 2024

    • model_3GC-SH-CH

      Public
      An integrated assessment model of third-generation cephalosporin-resistant *Salmonella* Heidelberg in broiler chickens.
      0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • CEDAR_docs

      Public
      0•0•0•0•Updated May 5, 2023May 5, 2023

    • .github

      Public
      iAM-AMR/.github is a special repository; the source of our global README.
      0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • iAM.AMR.DOC

      Public
      The public documentation of the iAM.AMR project.
      Python
      •1•0•6•0•Updated Jul 26, 2022Jul 26, 2022

    • CIPARS_sampling_regime

      Public
      This is an unofficial summary of the CIPARS AMR sampling regime. Check out cipars_sampling_regime.png; the squares in blue indicate where data are available.
      R
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • aro

      Public
      The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of an antibiotic
      Python
      •6•0•0•0•Updated Nov 3, 2021Nov 3, 2021

    • nAWC

      Public
      Neighbour Adjusted Wallace Coefficient for identifying cluster stability
      R
      •1•0•0•0•Updated Mar 16, 2021Mar 16, 2021

    • models

      Public
      A directory of iAM.AMR models, with download instructions.
      amr-models
      0•0•0•0•Updated Mar 9, 2021Mar 9, 2021

    • DiversitySeq

      Public
      DiversitySeq, from Sysbiobig.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 1, 2021Mar 1, 2021

    • data_foodbook

      Public
      R
      •0•0•0•0•Updated Feb 9, 2021Feb 9, 2021