Repositories list

• manual

  Public
  The OBIS manual

  CSS

  •24•6•19•1•Updated Jan 14, 2025Jan 14, 2025

• edna-tracker-data

  Public
  GitHub action for transforming eDNA samples metadata from PlutoF

  Python

  •1•1•1•1•Updated Jan 14, 2025Jan 14, 2025

• metabarcoding-feed

  Public
  Python

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• invertbase-feed

  Public
  Python

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• mpaeu_map_platform

  Public
  A platform for hosting SDM maps produced by OBIS

  HTML

  •0•2•0•0•Updated Jan 13, 2025Jan 13, 2025

• edna-results

  Public
  Processed eDNA Expeditions metabarcoding results

  Python

  •0•0•2•0•Updated Jan 9, 2025Jan 9, 2025

• species-thermal-limits

  Public
  Experimenting methods to estimate species thermal limits based on occurrence data

  R

  •0•1•0•0•Updated Jan 9, 2025Jan 9, 2025

• speciesgrids

  Public
  Python

  •0•1•1•0•Updated Jan 8, 2025Jan 8, 2025

• pyobis

  Public
  OBIS Python client

  oceanographymarine-datapython

  Jupyter Notebook

  •

  MIT License

  •10•15•12•1•Updated Jan 7, 2025Jan 7, 2025

• mpaeu_climatevelocity

  Public
  Codes used for the deliverable 2.8 - climate velocity

  HTML

  •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

• mpaeu_biodivstatus

  Public
  Biodiversity analysis for MPA Europe

  R

  •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

• obis-network-datasets

  Public
  Workflow for processing OBIS tagged datasets in GBIF

  Python

  •3•10•207•1•Updated Dec 20, 2024Dec 20, 2024

• obis-therm

  Public
  Produces dataset of sea temperature matched to occurrence records

  R

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• bioecoocean-demo-app

  Public
  0•1•0•0•Updated Dec 12, 2024Dec 12, 2024

• edna-dashboard

  Public
  R

  •0•0•9•0•Updated Dec 8, 2024Dec 8, 2024

• edna-reference-databases

  Public
  Python

  •0•0•2•0•Updated Dec 6, 2024Dec 6, 2024

• notebook-country-statistics

  Public
  0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• edna-analysis-climate

  Public
  JavaScript

  •

  MIT License

  •0•0•1•0•Updated Nov 19, 2024Nov 19, 2024

• pacman-pipeline-training

  Public
  Training materials for the PacMAN bioinformatics pipeline

  HTML

  •0•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• pacman-final-training

  Public
  Training materials for the PacMAN final project meeting

  Python

  •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

• mpaeu_sdm

  Public
  Habitat range maps for European marine species

  R

  •1•2•0•0•Updated Nov 14, 2024Nov 14, 2024

• jupyterhub-deploy-docker

  Public
  Reference deployment of JupyterHub with docker

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •368•0•2•0•Updated Nov 11, 2024Nov 11, 2024

• obon-2024-dna-training

  Public
  Training documents for OBON DNA data 2024

  HTML

  •0•4•0•0•Updated Nov 11, 2024Nov 11, 2024

• PacMAN-pipeline

  Public
  Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project

  R

  •

  MIT License

  •1•9•27•0•Updated Nov 9, 2024Nov 9, 2024

• sequence-search

  Public
  JavaScript

  •1•0•4•0•Updated Nov 7, 2024Nov 7, 2024

• pacmandetections

  Public
  Python

  •0•0•1•0•Updated Nov 5, 2024Nov 5, 2024

• hackathon

  Public
  Repository for hackathon resources

  Jupyter Notebook

  •1•2•0•0•Updated Oct 11, 2024Oct 11, 2024

• speedy-maps

  Public
  Mapbox GL JS visualization of speedy results

  JavaScript

  •0•0•0•0•Updated Oct 5, 2024Oct 5, 2024

• speedy

  Public
  Python

  •0•1•1•0•Updated Oct 5, 2024Oct 5, 2024

• mpaeu_msdm

  Public
  R

  •

  Other

  •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024