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    9 repositories

    • kehrlab.github.io

      Public
      Website of Algorithmic Bioinformatics group at the RCI
      HTML
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • Complex-SV-Genotyping

      Public
      C++
      •
      GNU General Public License v3.0
      •0•7•0•0•Updated Oct 9, 2024Oct 9, 2024

    • PopDel

      Public
      Population-wide Deletion Calling
      population-genomicsvariant-callingstructural-variationsv-callingbioinformatics
      C++
      •
      GNU General Public License v3.0
      •2•35•2•0•Updated Sep 5, 2024Sep 5, 2024

    • molemap

      Public
      C++
      •3•2•0•0•Updated Jun 14, 2024Jun 14, 2024

    • PopIns2

      Public
      Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
      C++
      •
      GNU General Public License v2.0
      •4•24•3•0•Updated Apr 29, 2024Apr 29, 2024

    • bcctools

      Public
      Correcting barcodes in 10X linked-read sequencing data.
      C++
      •
      GNU General Public License v3.0
      •3•4•1•0•Updated Apr 12, 2024Apr 12, 2024

    • bcmapScripts

      Public
      Scripts used for testing and benchmarking of bcmap
      Python
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

    • PopDel-scripts

      Public
      Collections of scripts used for the paper PopDel identifies medium-size deletions simultaneously in tens of thousands of genomes
      Shell
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 22, 2022Mar 22, 2022

    • bcsubset

      Public
      Tool for subsetting a BAM file based on a barcode whitelist
      C++
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 15, 2021Jul 15, 2021