Repositories list

• docker-opal

  Public
  Shell

  •

  GNU General Public License v3.0

  •11•7•5•0•Updated Feb 28, 2025Feb 28, 2025

• docker-mica

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• docker-agate

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•1•0•Updated Feb 28, 2025Feb 28, 2025

• opal

  Public
  OBiBa’s core database application for biobanks or epidemiological studies.

  Java

  •

  GNU General Public License v3.0

  •22•31•25•1•Updated Feb 28, 2025Feb 28, 2025

• mica2

  Public
  Mica is a web portal for epidemiological study consortia.

  Java

  •

  GNU General Public License v3.0

  •15•11•79•16•Updated Feb 28, 2025Feb 28, 2025

• agate

  Public
  OBiBa's user ID provider.

  Java

  •

  GNU General Public License v3.0

  •7•4•4•1•Updated Feb 28, 2025Feb 28, 2025

• obiba-commons

  Public
  Reusable code for persistence (hibernate), security, spring and wicket.

  Java

  •9•5•0•0•Updated Feb 27, 2025Feb 27, 2025

• mica-search-es8

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• plugins

  Public
  OBiBa plugins repository

  0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• amber-doc

  Public
  Amber documentation

  Python

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• rock-doc

  Public
  Rock R server documentation

  Python

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• agate-doc

  Public
  Agate documentation

  Python

  •0•1•0•0•Updated Feb 9, 2025Feb 9, 2025

• opal-doc

  Public
  Opal documentation

  Python

  •3•2•1•0•Updated Feb 9, 2025Feb 9, 2025

• mica-doc

  Public
  Mica documentation

  Python

  •2•0•1•0•Updated Feb 9, 2025Feb 9, 2025

• amber-template

  Public template
  Amber server with client apps, as Docker images to build.

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• obiba.github.io

  Public
  Obiba Website

  HTML

  •2•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• obiba-home

  Public
  Obiba development environment

  HTML

  •2•0•0•0•Updated Feb 8, 2025Feb 8, 2025

• mica-tables-spss

  Public
  Mica study table source plugin based on a SPSS file

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

• docker-rock

  Public
  Rock R server in a Docker container

  Shell

  •1•0•0•0•Updated Jan 28, 2025Jan 28, 2025

• rock

  Public
  R server with a REST API

  Java

  •

  GNU General Public License v3.0

  •1•3•2•1•Updated Jan 28, 2025Jan 28, 2025

• magma

  Public
  Data and meta-data abstraction layer.

  Java

  •

  GNU General Public License v3.0

  •14•6•11•0•Updated Jan 25, 2025Jan 25, 2025

• quasar-ui-amber

  Public
  Amber form components in a Quasar app extension

  Vue

  •

  MIT License

  •0•0•1•0•Updated Jan 20, 2025Jan 20, 2025

• s3.resourcer

  Public
  R package to access S3 compatible object stores as resources

  JavaScript

  •

  GNU Lesser General Public License v2.1

  •2•0•0•0•Updated Jan 18, 2025Jan 18, 2025

• opalr

  Public
  Opal R and Datashield utils

  R

  •3•3•3•0•Updated Jan 12, 2025Jan 12, 2025

• magma-datasource-spss

  Public
  Magma datasource to read SPSS files

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• datashield-deployment

  Public template
  Deployment of OBiBa for DataSHIELD

  Makefile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• opal-datasource-limesurvey

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•1•1•Updated Dec 3, 2024Dec 3, 2024

• docker-r

  Public
  Docker image with R inside and a lot of system libs

  Dockerfile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• jennite-vcf-store

  Public
  VCF store

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• opal-analysis-validate

  Public
  Opal analysis plugin for data quality assurance based on the validate R package

  R

  •

  GNU General Public License v3.0

  •0•0•2•1•Updated Oct 11, 2024Oct 11, 2024