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@pinskylab Global Change Research Group

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    69 repositories

    • kelpEVOL_fq_gz_processing

      Public
      Pre-Processing PIRE Data
      Shell
      •
      MIT License
      •2•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • db_web_framework

      Public
      MySQL web app interface
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • how_we_work

      Public
      Group resources and operating procedures
      8•13•1•1•Updated Jan 17, 2025Jan 17, 2025

    • metaKelp

      Public
      HTML
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • climate_community_crossrealm

      Public
      Comparisons of community responses to temperature change across realms
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 3, 2024Dec 3, 2024

    • logger_remote_temps

      Public
      Comparison of in situ temperature logger data to remote sensed temperatures on coral reefs, author Jaelyn Bos
      Python
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • CamotesROMS

      Public
      Project comparing observed larval dispersal against oceanographic mmodels for the Camotes Sea, Philippines.
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • globalFishGenetics

      Public
      Global marine patterns of fish genetic diversity
      R
      •
      MIT License
      •0•1•0•0•Updated May 6, 2024May 6, 2024

    • field

      Public
      Scripts used in the field for the Clownfish project to import and double check data
      HTML
      •1•1•5•1•Updated Mar 8, 2024Mar 8, 2024

    • Phils_GIS_R

      Public
      Clownfish map making, from scripts to QGIS files
      R
      •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

    • dynamic_range_model

      Public
      dynamic range models and forecast methods
      Jupyter Notebook
      •0•2•10•0•Updated Mar 6, 2024Mar 6, 2024

    • Atlantic_croaker_range

      Public
      Data and code for the genomic analysis of Atlantic croaker (Micropogonias undulatus) and incorporation of genomic data into range projections of the species.
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • SRA-submission

      Public
      Michelle's repo to keep track of how to submit to the sequencing read archive aka short read archive
      HTML
      •2•2•1•0•Updated Dec 5, 2023Dec 5, 2023

    • life_history_genetic_diversity

      Public
      R
      •0•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • bsb-shift-drivers

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • laboratory

      Public
      wet lab protocols including sequencing library preparation
      HTML
      •2•2•0•0•Updated Oct 19, 2023Oct 19, 2023

    • lab-manual

      Public
      Fay Lab Manual / how we work
      TeX
      •
      Creative Commons Attribution 4.0 International
      •58•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • DispersalVariation

      Public
      HTML
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • ClownfishGWAS

      Public
      Katrina Catalano's data and code for project investigating associations between larval traits and genotypes from Expressed Exome Capture Sequencing in Amphiprion percula.
      Jupyter Notebook
      •0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • RyanBatt_Trawl

      Public
      R
      •0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • OceanAdapt

      Public
      Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
      HTML
      •
      MIT License
      •7•14•39•0•Updated Jul 1, 2023Jul 1, 2023

    • arg_coral_reefs

      Public
      Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics
      genomicsgeneticsselectionpopulationdriftcoralhybridizationdispersal
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • A_clarkii_transcriptomics

      Public
      scripts, data, and plots for Amphiprion clarkii transcriptomics project
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

    • ebs_dissimilarity_time_sensitivity

      Public
      Exploration of the effects of spatial and temporal scale on biotic homogenization using the Eastern Bering Sea as a test case. Zoë Kitchel dissertation chapter.
      R
      •1•0•0•0•Updated May 30, 2023May 30, 2023

    • genomics

      Public
      Wrangling of genomic data and identity analysis
      HTML
      •2•3•2•1•Updated May 22, 2023May 22, 2023

    • Fish_regression_ABC

      Public
      Regression approximate bayesian computation (RABC) algorithm for parameter estimation and inference in a size-structured population model.
      Python
      •0•1•0•0•Updated May 1, 2023May 1, 2023

    • adultPADE

      Public
      Code for population structure and locus-environmental associations for adult summer flounder
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • mtDNA_Comparative

      Public
      R
      •1•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • Clownfish_persistence

      Public
      Allison's clownfish metapopulation persistence analysis
      R
      •0•0•1•0•Updated Apr 3, 2023Apr 3, 2023

    • project_velocity

      Public
      Project climate velocity for marine animals in North America out to 2100
      R
      •0•2•0•0•Updated Mar 31, 2023Mar 31, 2023