Repositories list

• rcom_nlp_env

  Public
  Docker container for Reproducible Computing workshop - Natural Language Processing (NLP) tools

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Nov 10, 2024Nov 10, 2024

• workshop-computational-foundations

  Public
  HTML

  •0•0•0•1•Updated Nov 5, 2024Nov 5, 2024

• workshop-intro-single-cell

  Public
  Intro to Single Cell Workshop lesson plans

  HTML

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Oct 22, 2024Oct 22, 2024

• single_cell_env

  Public
  An environment for single-cell RNAseq

  Dockerfile

  •0•2•0•0•Updated Oct 9, 2024Oct 9, 2024

• workshop-klippy

  Public
  Copy to Clipboard Buttons for RMarkdown HTML Documents

  R

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  MIT License

  •12•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• Watermelon

  Public
  RNA-Seq NGS Pipeline

  Python

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  Apache License 2.0

  •0•3•2•1•Updated Sep 24, 2024Sep 24, 2024

• workshop-rnaseq-demystified

  Public
  HTML

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  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• proteomics_env

  Public
  Dockerfile

  •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• rsem_star

  Public
  Environment with rsem and star

  Dockerfile

  •0•0•0•0•Updated Mar 6, 2024Mar 6, 2024

• WAT_diffex

  Public
  Environment for Watermelon's differential expression steps

  Dockerfile

  •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

• analysis_workflows

  Public
  Brief methods for common analyses

  HTML

  •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

• 2023-08-14-umich-rnaseq-demystified

  Public
  HTML

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  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

• 2023-07-31-umich-computational-foundations

  Public
  Computational Foundations Workshop Lessons

  HTML

  •0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

• 2023-05-07-umich-r-studio-revealed

  Public
  R/R-Studio Workshop lesson plans

  HTML

  •0•0•0•0•Updated Jun 28, 2023Jun 28, 2023

• 2023-03-13-umich-rnaseq-demystified

  Public
  RNA-Seq Demystified Workshop Lesson Plans

  HTML

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  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 14, 2023Mar 14, 2023

• 2023-02-27-umich-computational-foundations

  Public
  Computational Foundations Workshop Lesson Plans

  HTML

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• 2022-11-14-umich-rnaseq-demystified

  Public
  RNA-Seq Demystified workshop lesson plans

  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Nov 16, 2022Nov 16, 2022

• 2022-10-31-umich-computational-foundations

  Public
  Computational Foundations Workshop Lessons

  HTML

  •0•0•0•0•Updated Nov 2, 2022Nov 2, 2022

• multiqc

  Public
  Dockerfile

  •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

• 2022-07-25-umich-computational-foundations

  Public
  HTML

  •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

• 2022-08-08-umich-rnaseq-demystified

  Public
  HTML

  •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• 2022-02-28-umich-computational-foundations

  Public
  https://umich-brcf-bioinf.github.io/2022-02-28-umich-computational-foundations/html

  HTML

  •0•1•7•0•Updated Jul 6, 2022Jul 6, 2022

• macs2

  Public
  Dockerfile

  •0•0•0•0•Updated Jun 13, 2022Jun 13, 2022

• geomx_env

  Public
  An environment for GeoMX tools

  Dockerfile

  •0•0•0•0•Updated May 12, 2022May 12, 2022

• fastp

  Public
  Environment with fastp

  Dockerfile

  •0•0•0•0•Updated Apr 20, 2022Apr 20, 2022

• 2022-03-14-umich-rnaseq-demystified

  Public
  HTML

  •0•0•1•0•Updated Mar 16, 2022Mar 16, 2022

• 2021-11-15-umich-rnaseq-demystified

  Public
  Fall 2021 RNAseq Demystified Workshop

  HTML

  •0•1•0•0•Updated Dec 3, 2021Dec 3, 2021

• python3_pandas_excel

  Public
  Environment with python3, pandas, and several libraries for manipulating excel docs

  Dockerfile

  •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

• 2021-10-18-UM-SWC-Lessons

  Public
  Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.

  HTML

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  Other

  •12•0•0•0•Updated Oct 22, 2021Oct 22, 2021

• 2021-08-09-umich-rnaseq-demystified

  Public
  Repository for Summer 2021 RNASeq Demystified Workshop materials

  HTML

  •0•0•1•0•Updated Aug 10, 2021Aug 10, 2021