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1. kundajelab/genomedisco kundajelab/genomedisco Public

   Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

   Jupyter Notebook 26 10

2. kundajelab/3DChromatin_ReplicateQC kundajelab/3DChromatin_ReplicateQC Public

   Software to compute reproducibility and quality scores for Hi-C data

   Python 46 16

3. kundajelab/chromovar3d kundajelab/chromovar3d Public

   Code from the chromatin variation 3d project

   JavaScript 6 3

4. klarman-cell-observatory/perturbseq klarman-cell-observatory/perturbseq Public

   Perturb-seq analysis package

   Python 14 1

5. kundajelab/crispr_safe_targeting_regions kundajelab/crispr_safe_targeting_regions Public

   Repository for creating the CRISPR controls termed "safe harbor" regions from Morgens et al., 2017, Nat Comms.

   Shell 1