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Owkin

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  1. PyDESeq2 PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    Python 587 63

  2. FLamby FLamby Public

    Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

    Python 204 24

  3. HistoSSLscaling HistoSSLscaling Public

    Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

    Jupyter Notebook 142 11

  4. HE2RNA_code HE2RNA_code Public archive

    Train a model to predict gene expression from histology slides.

    Python 93 37

  5. GrAIdient GrAIdient Public

    GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

    Swift 84 2

  6. DSB2017 DSB2017 Public archive

    Data Science Bowl 2017 : Lung Cancer Detection

    Python 45 15

Repositories

Showing 10 of 43 repositories
  • PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    owkin/PyDESeq2’s past year of commit activity
    Python 587 MIT 63 42 6 Updated Nov 14, 2024
  • docker-dependency-updater Public

    Checks system dependencies and update them if required

    owkin/docker-dependency-updater’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 1 Updated Nov 12, 2024
  • fedeca Public

    Code repository associated with the FedECA article

    owkin/fedeca’s past year of commit activity
    Python 7 2 8 (5 issues need help) 0 Updated Nov 8, 2024
  • cytocommunity_ofta Public Forked from huBioinfo/CytoCommunity

    A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.

    owkin/cytocommunity_ofta’s past year of commit activity
    Jupyter Notebook 0 MIT 11 0 0 Updated Nov 8, 2024
  • geosketch Public Forked from brianhie/geosketch

    Geometry-preserving random sampling

    owkin/geosketch’s past year of commit activity
    Python 0 MIT 11 0 0 Updated Oct 29, 2024
  • deepdeconv-fork Public Forked from owkin/deepdeconv

    Deep probabilistic analysis of single-cell omics data

    owkin/deepdeconv-fork’s past year of commit activity
    Python 1 BSD-3-Clause 358 0 3 Updated Oct 10, 2024
  • drl-evaluation Public

    Robust evaluation of DRL methods for survival and gene essentiality prediction on bulk RNAseq

    owkin/drl-evaluation’s past year of commit activity
    Python 2 MIT 2 1 0 Updated Sep 28, 2024
  • philips-isyntax-rs Public Forked from AzHicham/philips-isyntax-rs

    Rust bindings for Philips Pathology SDK

    owkin/philips-isyntax-rs’s past year of commit activity
    Rust 0 Apache-2.0 4 0 0 Updated Sep 12, 2024
  • GrAIdient Public

    GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

    owkin/GrAIdient’s past year of commit activity
    Swift 84 MIT 2 0 0 Updated Sep 3, 2024
  • OAH-Clone-Test Public

    Test Clone Logs

    owkin/OAH-Clone-Test’s past year of commit activity
    0 0 0 0 Updated Aug 19, 2024
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