0.18.0

CHANGELOG

New features
Rewrote meld_assay module and exposed functionality of coordinate_melding through add_melded_assay method of DataStore. Coordinate intersections are done using binary_search function that employs a Numba accelerated implementation of binary search algorithm. This means that we don't need to use Bedtools anymore, which is hard to install on windows. create_counts_mat function modified to used normalized data and perform sparse write operations. meld_assay function renamed to coordinate_melding

Added tutorials
Added GeneScores section to scATAC-Seq basic workflow

Improvements
Added lsi_skip_first parameter to make_graph and AnnStream. The first LSI dimension usually captures sequencing depth so this parameter helps users control if they want to keep or discard this dimension.

Documentation changes
Changed order of vignettes in the TOC tree.
Added pseudotime vignette to colab list
Improved installation instructions for Windows