Release v1.0.0 · paulsengroup/hictkpy

What's Changed

Implement accessors for balancing weights by @robomics in #49
Automatically infer the resolution when file is in .cool format by @robomics in #51
Make the public API more Pythonic by @robomics in #85
Support interfacing spdlog with Python's logging stdlib by @robomics in #88
Expose the hictk::BinTable class by @robomics in #50

Fix query mirroring when fetching pixels as dfs by @robomics in #54
Fix bug when fetching whole-genome interactions as dense matrix by @robomics in #64
Fix bug when fetching interactions as sparse matrix by @robomics in #65

Bump pypa/cibuildwheel from 2.17 to 2.21 by @dependabot in #52, #55, #58, and #76
Workaround macOS CI failure by @robomics in #63
Update CI workflows by @robomics in #81
Optimize CI by @robomics in #89
Add jobs to publish releases/wheels to (Test) PyPI by @robomics in #100
Fix CI by @robomics in #103

Implement fuzzer by @robomics in #74
Test hictkpy against Python 3.13 by @robomics in #99
Skip test_bin_table.py::TestClass::test_to_df when test deps are missing by @robomics in #102

Do not export header files in wheels by @robomics in #47
Remove MANIFEST.in by @robomics in #70
Bump nanobind and generate type stubs by @robomics in #57
Update .pre-commit-config.yaml by @robomics in #66
Update conan_provider.cmake to 8bf396b by @robomics in #59
Make pandas and scipy optional deps by @robomics in #90
Fix stubgen by @robomics in #96
Pin pyarrow version and detect ABI incompatibilities at runtime by @robomics in #94
Use the Arrow C and PyCapsule data interfaces to share data with Python by @robomics in #98
Bump nanobind. Port to what will be hictk v2.0.0 in the near future by @robomics in #78
Bump hictk to v2.0.1 by @robomics in #104

Update docs by @robomics in #60 and #92
Maintenance by @robomics in #80
Explicitly link to std::filesystem by @robomics in #82
Refactor by @robomics in #83
Refuse to add pixels to files that have already been finalized by @robomics in #87
Re-enable logging on Windows by @robomics in #93
Undef SPDLOG_ACTIVE_LEVEL=SPDLOG_LEVEL_OFF when compiling on Windows by @robomics in #95
Prepare for release by @robomics in #105

Full Changelog: v0.0.5...v1.0.0