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@phac-nml

National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 123 33

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 117 26

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 49 11

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 4

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 26 7

Repositories

Showing 10 of 142 repositories
  • irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    phac-nml/irida’s past year of commit activity
    Java 40 Apache-2.0 31 166 11 Updated Nov 16, 2024
  • slm Public

    Display currently allocated memory across cluster nodes.

    phac-nml/slm’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 15, 2024
  • fetchdatairidanext Public

    Pipeline for downloading data from INSDC databases for IRIDA Next.

    phac-nml/fetchdatairidanext’s past year of commit activity
    Nextflow 0 MIT 1 2 1 Updated Nov 15, 2024
  • CryptoGenotyper Public

    CryptoGenotyper is a tool that allows for subtyping the parasite, Cryptosporidium

    phac-nml/CryptoGenotyper’s past year of commit activity
    Python 0 1 3 0 Updated Nov 14, 2024
  • go-cluster Public

    A utility for fast-matching and clustering.

    phac-nml/go-cluster’s past year of commit activity
    Go 1 0 3 0 Updated Nov 13, 2024
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 3 11 7 Updated Nov 13, 2024
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 15 MIT 2 20 1 Updated Nov 12, 2024
  • genomic_address_service Public

    Package for clustering sequences de novo and assignment to existing nomenclature

    phac-nml/genomic_address_service’s past year of commit activity
    Python 1 Apache-2.0 2 10 2 Updated Nov 8, 2024
  • ecoli_serotyping Public

    In silico prediction of E. coli serotype

    phac-nml/ecoli_serotyping’s past year of commit activity
    Python 49 Apache-2.0 11 6 1 Updated Nov 7, 2024
  • phac-nml/gasclustering’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Nov 7, 2024