Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Keep Full Fastq Read Identifiers [ Nanopore Minimap2 ] #18

Open
DarianHole opened this issue Jan 28, 2022 · 0 comments
Open

Keep Full Fastq Read Identifiers [ Nanopore Minimap2 ] #18

DarianHole opened this issue Jan 28, 2022 · 0 comments
Labels
enhancement New feature or request

Comments

@DarianHole
Copy link
Member

As title says, keep the full name of each of the fastq reads being generated in the nanopore minimap2 pipeline (so that we can do strict demultiplexing post host removal and other specifics that utilize that information)

Ex Currently.

@2f33f219-86dd-4b14-9442-2b1e068b7b22 runid=28fdafe3bad100kjfd94mh2bmfda932 read=84325 ch=426 start_time=2021-04-15T08:56:07.367881+00:00 flow_cell_id=FAR protocol_group_id=YYYY sample_id=YYYY barcode=barcode96 barcode_alias=barcode96 barcode=barcode96
ATGC
+
%$%'

Becomes

@2f33f219-86dd-4b14-9442-2b1e068b7b22
ATGC
+
%$%'

Want to keep the whole line

@DarianHole DarianHole added the enhancement New feature or request label Jan 28, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant