Merge pull request #42 from smoia/feat/manychanges

Revamping of the library (better title after OHBM)

.all-contributorsrc

@@ -15,13 +15,45 @@
         "ideas"
       ]
     },
+    {
+      "login": "eril892",
+      "name": "Raphaël Fournier",
+      "avatar_url": "https://avatars.githubusercontent.com/u/91672536?v=4",
+      "profile": "https://github.com/eril892",
+      "contributions": [
+        "code",
+        "userTesting",
+        "doc"
+      ]
+    },
+    {
+      "login": "TomasLenc",
+      "name": "Tomas Lenc",
+      "avatar_url": "https://avatars.githubusercontent.com/u/10827440?v=4",
+      "profile": "https://github.com/TomasLenc",
+      "contributions": [
+        "bug",
+        "test"
+      ]
+    },
+    {
+      "login": "rzlim08",
+      "name": "rzlim08",
+      "avatar_url": "https://avatars.githubusercontent.com/u/37033997?v=4",
+      "profile": "https://github.com/rzlim08",
+      "contributions": [
+        "code",
+        "test"
+      ]
+    },
     {
       "login": "rmarkello",
       "name": "Ross Markello",
       "avatar_url": "https://avatars0.githubusercontent.com/u/14265705?v=4",
       "profile": "http://rossmarkello.com",
       "contributions": [
-        "infra"
+        "infra",
+        "mentoring"
       ]
     },
     {
@@ -35,7 +67,17 @@
         "projectManagement",
         "code",
         "ideas",
-        "doc"
+        "doc",
+        "mentoring"
+      ]
+    },
+    {
+      "login": "AlicePatin",
+      "name": "Alice Patin",
+      "avatar_url": "https://avatars.githubusercontent.com/u/44365985?v=4",
+      "profile": "https://github.com/AlicePatin",
+      "contributions": [
+        "code"
       ]
     },
     {
@@ -57,6 +99,17 @@
       "contributions": [
         "infra"
       ]
+    },
+    {
+      "login": "kristinazvolanek",
+      "name": "Kristina Zvolanek",
+      "avatar_url": "https://avatars.githubusercontent.com/u/54590158?v=4",
+      "profile": "https://github.com/kristinazvolanek",
+      "contributions": [
+        "infra",
+        "review",
+        "userTesting"
+      ]
     }
   ],
   "contributorsPerLine": 8,

.github/workflows/auto-release.yml

@@ -10,7 +10,7 @@ on:
 
 jobs:
   auto-release:
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-20.04
     # Set skip ci to avoid loops
     if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')"
     # Set bash as default shell for jobs

.github/workflows/pythonpublish.yml

@@ -10,7 +10,7 @@ on:
 jobs:
   deploy:
 
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-20.04
 
     steps:
       - name: Checkout source

.pre-commit-config.yaml

@@ -11,23 +11,23 @@ repos:
     -   id: check-case-conflict
     -   id: check-merge-conflict
 -   repo: https://github.com/psf/black
-    rev: 22.10.0
+    rev: 22.12.0
     hooks:
     -   id: black
 -   repo: https://github.com/pycqa/isort
-    rev: 5.10.1
+    rev: 5.11.4
     hooks:
     -   id: isort
 -   repo: https://github.com/pycqa/flake8
     rev: 6.0.0
     hooks:
     -   id: flake8
 -   repo: https://github.com/pycqa/pydocstyle
-    rev: 6.1.1
+    rev: 6.2.3
     hooks:
       - id: pydocstyle
 -   repo: https://github.com/pre-commit/pygrep-hooks
-    rev: v1.9.0
+    rev: v1.10.0
     hooks:
       - id: rst-backticks
       - id: rst-directive-colons

README.md

@@ -26,13 +26,22 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d
 <!-- prettier-ignore-start -->
 <!-- markdownlint-disable -->
 <table>
-  <tr>
-    <td align="center"><a href="https://github.com/CesarCaballeroGaudes"><img src="https://avatars1.githubusercontent.com/u/7611340?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Cesar Caballero Gaudes</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=CesarCaballeroGaudes" title="Code">💻</a> <a href="#ideas-CesarCaballeroGaudes" title="Ideas, Planning, & Feedback">🤔</a></td>
-    <td align="center"><a href="http://rossmarkello.com"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
-    <td align="center"><a href="https://github.com/smoia"><img src="https://avatars3.githubusercontent.com/u/35300580?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Stefano Moia</b></sub></a><br /><a href="#data-smoia" title="Data">🔣</a> <a href="#infra-smoia" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#projectManagement-smoia" title="Project Management">📆</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Code">💻</a> <a href="#ideas-smoia" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Documentation">📖</a></td>
-    <td align="center"><a href="https://github.com/tsalo"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Atsalo" title="Reviewed Pull Requests">👀</a></td>
-    <td align="center"><a href="https://github.com/ineschh"><img src="https://avatars.githubusercontent.com/u/72545702?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Inés Chavarría</b></sub></a><br /><a href="#infra-ineschh" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
-  </tr>
+  <tbody>
+    <tr>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/CesarCaballeroGaudes"><img src="https://avatars1.githubusercontent.com/u/7611340?v=4?s=100" width="100px;" alt="Cesar Caballero Gaudes"/><br /><sub><b>Cesar Caballero Gaudes</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=CesarCaballeroGaudes" title="Code">💻</a> <a href="#ideas-CesarCaballeroGaudes" title="Ideas, Planning, & Feedback">🤔</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/eril892"><img src="https://avatars.githubusercontent.com/u/91672536?v=4?s=100" width="100px;" alt="Raphaël Fournier"/><br /><sub><b>Raphaël Fournier</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Code">💻</a> <a href="#userTesting-eril892" title="User Testing">📓</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Documentation">📖</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/TomasLenc"><img src="https://avatars.githubusercontent.com/u/10827440?v=4?s=100" width="100px;" alt="Tomas Lenc"/><br /><sub><b>Tomas Lenc</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/issues?q=author%3ATomasLenc" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=TomasLenc" title="Tests">⚠️</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/rzlim08"><img src="https://avatars.githubusercontent.com/u/37033997?v=4?s=100" width="100px;" alt="rzlim08"/><br /><sub><b>rzlim08</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Code">💻</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Tests">⚠️</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="http://rossmarkello.com"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4?s=100" width="100px;" alt="Ross Markello"/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#mentoring-rmarkello" title="Mentoring">🧑‍🏫</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/smoia"><img src="https://avatars3.githubusercontent.com/u/35300580?v=4?s=100" width="100px;" alt="Stefano Moia"/><br /><sub><b>Stefano Moia</b></sub></a><br /><a href="#data-smoia" title="Data">🔣</a> <a href="#infra-smoia" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#projectManagement-smoia" title="Project Management">📆</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Code">💻</a> <a href="#ideas-smoia" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Documentation">📖</a> <a href="#mentoring-smoia" title="Mentoring">🧑‍🏫</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/AlicePatin"><img src="https://avatars.githubusercontent.com/u/44365985?v=4?s=100" width="100px;" alt="Alice Patin"/><br /><sub><b>Alice Patin</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=AlicePatin" title="Code">💻</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/tsalo"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4?s=100" width="100px;" alt="Taylor Salo"/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Atsalo" title="Reviewed Pull Requests">👀</a></td>
+    </tr>
+    <tr>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/ineschh"><img src="https://avatars.githubusercontent.com/u/72545702?v=4?s=100" width="100px;" alt="Inés Chavarría"/><br /><sub><b>Inés Chavarría</b></sub></a><br /><a href="#infra-ineschh" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
+      <td align="center" valign="top" width="12.5%"><a href="https://github.com/kristinazvolanek"><img src="https://avatars.githubusercontent.com/u/54590158?v=4?s=100" width="100px;" alt="Kristina Zvolanek"/><br /><sub><b>Kristina Zvolanek</b></sub></a><br /><a href="#infra-kristinazvolanek" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Akristinazvolanek" title="Reviewed Pull Requests">👀</a> <a href="#userTesting-kristinazvolanek" title="User Testing">📓</a></td>
+    </tr>
+  </tbody>
 </table>
 
 <!-- markdownlint-restore -->

phys2denoise/__init__.py

@@ -1,4 +1,5 @@
-
 from ._version import get_versions
-__version__ = get_versions()['version']
+from .metrics import __all__, cardiac, chest_belt, gas, multimodal, responses, utils
+
+__version__ = get_versions()["version"]
 del get_versions