412 user guide and api documentation

.github/workflows/push_doc.yml

@@ -0,0 +1,54 @@
+name: Build documentation
+
+on:
+  push:
+    branches:
+      - main
+      - test-ci*
+  pull_request:
+    branches:
+      - '**'
+
+permissions:
+  contents: write
+
+jobs:
+  push_doc:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+
+      - run: pip install .[doc]
+
+      - name: Sphinx build
+        run: sphinx-build doc build
+
+      - name: Save the PR number
+        env:
+          GITHUB_PULL_REQUEST_NUMBER: ${{github.event.number}}
+        run: |
+          echo "Storing PR number ${{github.event.number}} to 'pull_request_number' file"
+          echo ${{github.event.number}} > pull_request_number
+
+      - name: Upload doc preview
+        # The publication of the preview itself happens in pr-doc-preview.yml
+        if: ${{ github.event_name == 'pull_request' }}
+        uses: actions/upload-artifact@v3
+        with:
+          name: doc-preview
+          path: |
+            ./build
+            pull_request_number
+
+      - name: Deploy
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          publish_branch: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./build
+          commit_message: "[ci skip] ${{ github.event.head_commit.message }}"

.gitignore

@@ -164,6 +164,10 @@ cython_debug/
 .DS_Store
 *.datamander
 
+# Sphinx documentation
+doc/_build/
+doc/auto_examples/
+
 # Visual studio code
 .vscode
 

doc/Makefile

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+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

doc/_static/css/custom.css

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+div.docutils.container.index-features {
+    width: 450px;
+}
+
+div.docutils.container.index-box {
+    background-color: var(--pst-color-white-highlight);
+    border-radius: 10px;
+    color: black;
+    padding: 5px;
+    margin-left: 15px;
+    float: right;
+    width: 400px;
+}
+
+/* Need to be able to have absolute positioning for the div inside */
+.bd-main .bd-content .bd-article-container .bd-article {
+    position: relative;
+}
+
+@media (min-width: 792px) {
+    div.docutils.container.index-features {
+        position: absolute;
+        top: 10px;
+        right: 0px;
+    }
+}
+
+@media (min-width: 1092px) {
+    div.docutils.container.index-box {
+        margin-left: 30px;
+        margin-right: -15px;
+    }
+}
+
+@media (max-width: 892px) {
+    div.docutils.container.index-box {
+        max-width: 500px;
+        width: unset;
+        float: unset;
+        margin-left: auto;
+        margin-right: auto;
+    }
+}

doc/_templates/class.rst

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+:mod:`{{module}}`.{{objname}}
+{{ underline }}==============
+
+.. rst-class:: side_comment
+
+    Usage examples at the bottom of this page.
+
+.. currentmodule:: {{ module }}
+
+.. autoclass:: {{ objname }}
+   :inherited-members:
+
+   {% block methods %}
+
+   {% endblock %}
+
+.. raw:: html
+
+    <div class="clearer"></div>

doc/_templates/function.rst

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+:mod:`{{module}}`.{{objname}}
+{{ underline }}====================
+
+.. currentmodule:: {{ module }}
+
+.. autofunction:: {{ objname }}
+
+.. raw:: html
+
+    <div class="clearer"></div>

doc/api.rst

@@ -0,0 +1,39 @@
+API
+===
+
+.. currentmodule:: skore
+
+This page lists all the public functions and classes of the ``skore``
+package.
+
+
+The ``skore`` UI
+----------------
+
+These classes are meant for ``skore``'s user interface.
+
+.. autosummary::
+    :toctree: generated/
+    :template: class.rst
+    :nosignatures:
+
+    Project
+
+.. autosummary::
+    :toctree: generated/
+    :template: function.rst
+    :nosignatures:
+
+    load
+
+The ``skore`` machine learning programming assistant
+----------------------------------------------------
+
+These functions and classes enhance ``scikit-learn``'s ones.
+
+.. autosummary::
+    :toctree: generated/
+    :template: function.rst
+    :nosignatures:
+
+    cross_validate

doc/conf.py

@@ -0,0 +1,61 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = "skore"
+copyright = "2024, Probabl team"
+author = "Probabl team"
+release = "0.1.1"
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = [
+    "sphinx_gallery.gen_gallery",
+    "sphinx.ext.autosummary",
+    "sphinx.ext.intersphinx",
+    "numpydoc",
+    "sphinx_design",
+    "myst_parser",  # added by sylvaincom
+]
+templates_path = ["_templates"]
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ["_templates"]
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_theme = "pydata_sphinx_theme"
+html_static_path = ["_static"]
+
+html_css_files = [
+    "css/custom.css",
+]
+html_js_files = []
+
+# sphinx_gallery options
+sphinx_gallery_conf = {
+    "examples_dirs": "../examples",  # path to example scripts
+    "gallery_dirs": "auto_examples",  # path to gallery generated output
+}
+
+# intersphinx configuration
+intersphinx_mapping = {
+    "sklearn": ("https://scikit-learn.org/stable/", None),
+}
+
+numpydoc_show_class_members = False
+
+html_title = "skore"
+
+html_theme_options = {
+    "announcement": (
+        "https://raw.githubusercontent.com/soda-inria/hazardous/main/doc/announcement.html"
+    ),
+}

doc/generated/skore.Project.rst

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+:mod:`skore`.Project
+===========================
+
+.. rst-class:: side_comment
+
+    Usage examples at the bottom of this page.
+
+.. currentmodule:: skore
+
+.. autoclass:: Project
+   :inherited-members:
+
+
+
+
+
+.. raw:: html
+
+    <div class="clearer"></div>

doc/generated/skore.cross_validate.rst

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+:mod:`skore`.cross_validate
+========================================
+
+.. currentmodule:: skore
+
+.. autofunction:: cross_validate
+
+.. raw:: html
+
+    <div class="clearer"></div>

doc/generated/skore.load.rst

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+:mod:`skore`.load
+==============================
+
+.. currentmodule:: skore
+
+.. autofunction:: load
+
+.. raw:: html
+
+    <div class="clearer"></div>

doc/getting_started.rst

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+.. _getting_started:
+
+Getting started
+===============
+
+``skore`` UI
+------------
+
+.. currentmodule:: skore
+
+From your shell, initialize a skore project, here named ``project.skore``, that
+will be in your current working directory:
+
+.. code:: console
+
+    python -m skore create "project.skore"
+
+Then, from your Python code (in the same directory), load the project and store
+an integer for example:
+
+.. code-block:: python
+
+    from skore import load
+    project = load("project.skore")
+    project.put("my_int", 3)
+
+Finally, from your shell (in the same directory), start the UI locally:
+
+.. code:: console
+
+    python -m skore launch project.skore
+
+This will automatically open a browser at the UI's location:
+
+#. On the top left, create a new ``View``.
+#. From the ``Elements`` section on the bottom left, you can add stored items to this view, either by double-cliking on them or by doing drag-and-drop.
+
+For more features, please look into :ref:`auto_examples`.
+
+.. image:: https://raw.githubusercontent.com/sylvaincom/sylvaincom.github.io/master/files/probabl/skore/2024_10_14_skore_demo.gif
+   :alt: Getting started with ``skore`` demo

doc/index.rst

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+.. You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to ``skore``
+====================
+
+With skore, data scientists can:
+
+#. Track and visualize their ML/DS results.
+#. Get assistance when developing their ML/DS projects.
+
+   - Scikit-learn compatible :func:`~skore.cross_validate` provides insights and checks on cross-validation.
+
+These are only the initial features: skore is a work in progress and aims to be
+an end-to-end library for data scientists.
+Stay tuned!
+Feedbacks are welcome: please feel free to join our `Discord <http://discord.probabl.ai>`_ or `create an issue <https://github.com/probabl-ai/skore/issues>`_.
+
+We are a product team working at `Probabl <https://probabl.ai>`_ and our motto is #OwnYourDataScience.
+
+- License: BSD
+- GitHub repository: https://github.com/probabl-ai/skore
+- Discord: http://discord.probabl.ai
+- Status: under development, API is subject to change.
+
+.. image:: https://raw.githubusercontent.com/sylvaincom/sylvaincom.github.io/master/files/probabl/skore/2024_10_14_skore_demo.gif
+   :alt: Getting started with skore demo
+
+.. currentmodule:: skore
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   install
+   getting_started
+   auto_examples/index
+   user_guide
+   api