Fixed mamba

pyomeca · pariterre · Apr 3, 2024 · Feb 16, 2024 · Apr 2, 2024 · Apr 3, 2024
commit 05c17de18879518b048a97ffe8ba0c145d4e9b53
diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml
@@ -34,7 +34,6 @@ jobs:
 
       - name: Print mamba info
         run: | 
-          mamba config --show
           mamba info
           mamba list
 

diff --git a/bioviz/__init__.py b/bioviz/__init__.py

            self.n_max_events = 100
            self.last_event_index = -1
            self.events: list[dict[str:RectangleOnSlider, str:int, str:str]] = []  # events [marker/frame/event_name]

            self.active_analyses: AnalysePanel | None = None
            self.column_stretch = 0
diff --git a/bioviz/analyses/muscle_analyses.py b/bioviz/analyses/muscle_analyses.py
        self.ax_passive_forces.set_facecolor(background_color)
        self.ax_passive_forces.set_title("Passive forces")
        self.ax_passive_forces.set_ylabel("Passive forces coeff")
        self.ax_passive_forces.set_ylim((0, 1))

        # Add active forces
        self.canvas_active_forces = FigureCanvasQTAgg(plt.figure(facecolor=background_color))
        self.ax_active_forces.set_facecolor(background_color)
        self.ax_active_forces.set_title("Active forces")
        self.ax_active_forces.set_ylabel("Active forces coeff")
        self.ax_active_forces.set_ylim((0, 1))
        self.active_forces_slider = QSlider()
        active_forces_layout.addWidget(self.active_forces_slider)
        self.active_forces_slider.setPalette(self.main_window.palette_active)
                    if mus.type() != biorbd.IDEALIZED_ACTUATOR:
                        active_forces[i, m] = biorbd.HillType(mus).FlCE(emg)
                    else:
                        active_forces[i, m] = emg.activation()

        return x_axis, length, moment_arm, passive_forces, active_forces

    def __update_specific_plot(self, canvas, ax, x, y, skip=False, autoscale_y=True):
        # Plot all active muscles
        number_of_active = 0
        for m in range(self.n_mus):
        # If there is no data skip relim and vertical bar adjustment
        if number_of_active != 0:
            # relim so the plot looks nice
            if not autoscale_y:
                y_lim = ax.get_ylim()
            ax.relim()
            ax.autoscale(enable=True)
            if not autoscale_y:
                ax.set_ylim(y_lim)

            # Adjust axis label (give a generic name)
            if self.animation_checkbox.isChecked():
diff --git a/bioviz/interfaces_collection.py b/bioviz/interfaces_collection.py

        def _get_data_from_eigen(self, Q=None, compute_kin=True):
            self.data = []
            allJCS = self.m.allGlobalJCS(Q, compute_kin)
            for jcs in allJCS:
                self.data.append(jcs.to_array())

	self.n_max_events = 100
	self.last_event_index = -1
	self.events: list[dict[str:RectangleOnSlider, str:int, str:str]] = [] # events [marker/frame/event_name]
Check warning on line 334 in bioviz/__init__.py Codecov / codecov/patch bioviz/__init__.py#L334 `Added line #L334 was not covered by tests`

	self.active_analyses: AnalysePanel \| None = None
	self.column_stretch = 0
	self.ax_passive_forces.set_facecolor(background_color)
	self.ax_passive_forces.set_title("Passive forces")
	self.ax_passive_forces.set_ylabel("Passive forces coeff")
	self.ax_passive_forces.set_ylim((0, 1))
Check warning on line 93 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L93 `Added line #L93 was not covered by tests`

	# Add active forces
	self.canvas_active_forces = FigureCanvasQTAgg(plt.figure(facecolor=background_color))
	self.ax_active_forces.set_facecolor(background_color)
	self.ax_active_forces.set_title("Active forces")
	self.ax_active_forces.set_ylabel("Active forces coeff")
	self.ax_active_forces.set_ylim((0, 1))
Check warning on line 104 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L104 `Added line #L104 was not covered by tests`
	self.active_forces_slider = QSlider()
	active_forces_layout.addWidget(self.active_forces_slider)
	self.active_forces_slider.setPalette(self.main_window.palette_active)
	if mus.type() != biorbd.IDEALIZED_ACTUATOR:
	active_forces[i, m] = biorbd.HillType(mus).FlCE(emg)
	else:
	active_forces[i, m] = emg.activation()
Check warning on line 231 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L231 `Added line #L231 was not covered by tests`

	return x_axis, length, moment_arm, passive_forces, active_forces

	def __update_specific_plot(self, canvas, ax, x, y, skip=False, autoscale_y=True):
Check warning on line 235 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L235 `Added line #L235 was not covered by tests`
	# Plot all active muscles
	number_of_active = 0
	for m in range(self.n_mus):
	# If there is no data skip relim and vertical bar adjustment
	if number_of_active != 0:
	# relim so the plot looks nice
	if not autoscale_y:
	y_lim = ax.get_ylim()
Check warning on line 253 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L252-L253 `Added lines #L252 - L253 were not covered by tests`
	ax.relim()
	ax.autoscale(enable=True)
	if not autoscale_y:
	ax.set_ylim(y_lim)
Check warning on line 257 in bioviz/analyses/muscle_analyses.py Codecov / codecov/patch bioviz/analyses/muscle_analyses.py#L256-L257 `Added lines #L256 - L257 were not covered by tests`

	# Adjust axis label (give a generic name)
	if self.animation_checkbox.isChecked():

	def _get_data_from_eigen(self, Q=None, compute_kin=True):
	self.data = []
	allJCS = self.m.allGlobalJCS(Q, compute_kin)
Check warning on line 284 in bioviz/interfaces_collection.py Codecov / codecov/patch bioviz/interfaces_collection.py#L284 `Added line #L284 was not covered by tests`
	for jcs in allJCS:
	self.data.append(jcs.to_array())