added rotate flag option to MatlabIO class

maintenance/anaconda/Vagrantfile

@@ -0,0 +1,74 @@
+# -*- mode: ruby -*-
+# vi: set ft=ruby :
+
+# All Vagrant configuration is done below. The "2" in Vagrant.configure
+# configures the configuration version (we support older styles for
+# backwards compatibility). Please don't change it unless you know what
+# you're doing.
+Vagrant.configure("2") do |config|
+  # The most common configuration options are documented and commented below.
+  # For a complete reference, please see the online documentation at
+  # https://docs.vagrantup.com.
+
+  # Every Vagrant development environment requires a box. You can search for
+  # boxes at https://vagrantcloud.com/search.
+  config.vm.box = "jhcook/macos-sierra"
+
+  # Disable automatic box update checking. If you disable this, then
+  # boxes will only be checked for updates when the user runs
+  # `vagrant box outdated`. This is not recommended.
+  # config.vm.box_check_update = false
+
+  # Create a forwarded port mapping which allows access to a specific port
+  # within the machine from a port on the host machine. In the example below,
+  # accessing "localhost:8080" will access port 80 on the guest machine.
+  # NOTE: This will enable public access to the opened port
+  # config.vm.network "forwarded_port", guest: 80, host: 8080
+
+  # Create a forwarded port mapping which allows access to a specific port
+  # within the machine from a port on the host machine and only allow access
+  # via 127.0.0.1 to disable public access
+  # config.vm.network "forwarded_port", guest: 80, host: 8080, host_ip: "127.0.0.1"
+
+  # Create a private network, which allows host-only access to the machine
+  # using a specific IP.
+  # config.vm.network "private_network", ip: "192.168.33.10"
+
+  # Create a public network, which generally matched to bridged network.
+  # Bridged networks make the machine appear as another physical device on
+  # your network.
+  # config.vm.network "public_network"
+
+  # Share an additional folder to the guest VM. The first argument is
+  # the path on the host to the actual folder. The second argument is
+  # the path on the guest to mount the folder. And the optional third
+  # argument is a set of non-required options.
+  # config.vm.synced_folder "../data", "/vagrant_data"
+
+  # Provider-specific configuration so you can fine-tune various
+  # backing providers for Vagrant. These expose provider-specific options.
+  # Example for VirtualBox:
+  #
+  # config.vm.provider "virtualbox" do |vb|
+  #   # Display the VirtualBox GUI when booting the machine
+  #   vb.gui = true
+  #
+  #   # Customize the amount of memory on the VM:
+  #   vb.memory = "1024"
+  # end
+  #
+  # View the documentation for the provider you are using for more
+  # information on available options.
+
+  # Enable provisioning with a shell script. Additional provisioners such as
+  # Puppet, Chef, Ansible, Salt, and Docker are also available. Please see the
+  # documentation for more information about their specific syntax and use.
+  config.vm.synced_folder ".", "/Users/vagrant/anaconda",
+    type: "rsync",
+    rsync__chown: false
+  config.vm.provision "shell", inline: <<-SHELL
+    sudo chown -R vagrant:staff anaconda
+    rm -rf anaconda/pyrocko.git/.git
+    ./anaconda/deploy.sh -u
+  SHELL
+end

maintenance/anaconda/build.sh

@@ -0,0 +1,2 @@
+# To be run from conda build
+$PYTHON setup.py install

maintenance/anaconda/deploy.sh

@@ -0,0 +1,44 @@
+#!/bin/bash
+# To return a failure if any commands inside fail
+# More: https://conda.io/docs/user-guide/tutorials/build-pkgs.html
+set -e
+MINICONDA_URL="https://repo.continuum.io/miniconda"
+CONDA_PREFIX="$HOME/miniconda3"
+BUILD_DIR=`dirname $0`
+export PATH=$PATH:$CONDA_PREFIX/bin
+
+if [ `uname` == "Darwin" ]; then
+    MINICONDA_FILE="Miniconda3-latest-MacOSX-x86_64.sh"
+else
+    MINICONDA_FILE="Miniconda3-latest-Linux-x86_64.sh"
+fi
+
+# Install Miniconda
+read -r -p "Do you want to download and install $MINICONDA_FILE [y/N]?" resp
+case $resp in
+    [yY][eE][sS]|[yY] )
+        curl "$MINICONDA_URL/$MINICONDA_FILE" -o "$BUILD_DIR/miniconda.sh";
+        chmod +x "$BUILD_DIR/miniconda.sh"
+        ./$BUILD_DIR/miniconda.sh -b -u
+        conda install -y conda-build anaconda-client
+        ;;
+    *)
+        ;;
+esac
+
+# Install Anaconda client and build tools
+read -r -p "Do you want to upload pyrocko to Anaconda (https://anaconda.org/pyrocko/pyrocko) [y/N]?" resp
+case $resp in
+    [yY][eE][sS]|[yY] )
+        anaconda logout;
+        anaconda login --username pyrocko --password $ANACONDA_PASSWORD;
+        conda config --set anaconda_upload yes;
+        ;;
+    * ) conda config --set anaconda_upload no;
+        ;;
+esac
+conda-build $BUILD_DIR
+
+# Workaround for https://github.com/travis-ci/travis-ci/issues/6522
+# Turn off exit on failure.
+set +e

maintenance/anaconda/meta.yaml

@@ -0,0 +1,37 @@
+{% set data = load_setup_py_data() %}
+
+package:
+  name: pyrocko-kite
+  version: {{ data.get('version') }}
+
+source:
+  path: kite.git/
+  # git-url: https://github.com/pyrocko/kite
+
+requirements:
+  build:
+    - python
+    - numpy
+  run:
+    - numpy
+    - scipy
+    - matplotlib
+    - pyqt
+    - pyyaml
+    - future
+    - requests
+
+test:
+  requires:
+    - nose
+  script_files:
+    - kite.git/test
+  commands:
+    - nosetests --verbosity=2 --detailed-errors test
+
+about:
+  home: https://pyrocko.org
+  license: GPL3
+  license-family: GPL
+  summary: A versatile seismology toolkit for Python.
+  doc_url: https://pyrocko.org/docs/kite

maintenance/deploy-anaconda_linux.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+if [ ! -f deploy-anaconda_linux.sh ] ; then
+    echo "must be run from kite's maintenance directory"
+    exit 1
+fi
+
+branch="$1"
+if [ -z "$branch" ]; then
+    branch=master
+fi
+
+echo "Building pyrocko-kite for Anaconda on branch $branch"
+rm -rf "anaconda/kite.git"
+git clone -b $branch "../" "anaconda/kite.git"
+rm -rf "anaconda/kite.git/maintenance/anaconda/meta.yaml"
+
+anaconda/deploy.sh $1

maintenance/deploy-docs.sh

@@ -0,0 +1,32 @@
+#!/bin/bash
+set -e
+VERSION=v`python -c "import kite; print(kite.__version__);"`
+
+if [ ! -f maintenance/deploy-docs.sh ] ; then
+    echo "must be run from pyrocko's toplevel directory"
+    exit 1
+fi
+
+cd doc
+rm -rf build/$VERSION
+make clean; make html $1
+cp -r build/html build/$VERSION
+
+read -r -p "Are your sure to update live docs at http://pyrocko.org/docs/kite/$VERSION [y/N]?" resp
+case $resp in
+    [yY][eE][sS]|[yY] )
+        rsync -av build/$VERSION pyrocko@hive:/var/www/pyrocko.org/docs/kite/;
+        ;;
+    * ) ;;
+esac
+
+read -r -p "Do you want to link 'current' to the just uploaded version $VERSION [y/N]?" resp
+case $resp in
+    [yY][eE][sS]|[yY] )
+        echo "Linking docs/kite/$VERSION to docs/kite/current";
+        ssh pyrocko@hive "rm -rf /var/www/pyrocko.org/docs/kite/current; ln -s /var/www/pyrocko.org/docs/$VERSION /var/www/pyrocko.org/docs/current";
+        ;;
+    * ) ;;
+esac
+
+cd ..

setup.py

@@ -15,6 +15,8 @@ def __init__(self):
         def get_include(self):
             return ''
 
+version = '2017.11'
+
 
 def _check_for_openmp():
     """Check  whether the default compiler supports OpenMP.
@@ -91,7 +93,7 @@ def _check_for_openmp():
 
 setup(
     name='kite',
-    version='0.0.2',
+    version=version,
     description='Handle SAR displacement data towards pyrocko',
     author='Marius P. Isken, Henriette Sudhaus;'
            'BriDGes Emmily Noether-Programm (DFG)',

src/__init__.py

@@ -7,4 +7,4 @@
 from .sandbox_scene import SandboxScene, TestSandboxScene  # noqa
 
 
-__version__ = '0.2'
+__version__ = '2017.11'

src/scene_io.py

@@ -121,6 +121,8 @@ def validate(self, filename, **kwargs):
             return False
 
     def read(self, filename, **kwargs):
+        rotate = kwargs.pop('rotate', True)
+
         import utm
         c = self.container
 
@@ -133,9 +135,17 @@ def read(self, filename, **kwargs):
         for mat_k, v in mat.iteritems():
             for io_k in c.iterkeys():
                 if io_k in mat_k:
-                    c[io_k] = num.rot90(mat[mat_k])
+                    if rotate:
+                        c[io_k] = num.rot90(mat[mat_k])
+                    else:
+                        c[io_k] = mat[mat_k]
+
                 elif 'ig_' in mat_k:
-                    c['displacement'] = num.rot90(mat[mat_k])
+                    if rotate:
+                        c['displacement'] = num.rot90(mat[mat_k])
+                    else:
+                        c['displacement'] = mat[mat_k]
+
                 elif 'xx' in mat_k:
                     utm_e = mat[mat_k].flatten()
                 elif 'yy' in mat_k: